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HG10012092 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012092
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr01:17437536..17438132
RNA-Seq ExpressionHG10012092
SyntenyHG10012092
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.2e-2534.44Show/hide
Query:  GSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW---------------FQITKMEQI
        GSHL+ W+++T+ KE GGLGI +++ TN ALL KW+WRYH+EP  LWR LI  KY    P  +P+    +S+++PW               + +   +QI
Subjt:  GSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW---------------FQITKMEQI

Query:  VFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM
         F   N S                 D+  ++ DVW  N   W   FRR L +RE ++W ++L +  +PR+N G    +W+
Subjt:  VFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.4e-2533.33Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------
        R FLW+      GSHL+ W+++T+ KE GGLGI +++ TN ALL KW+WRY++EP  LWR LI  KY    P  +P+    +S+++PW            
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------

Query:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM
           + +   +QI F   N S                 D+  ++ DVW  N   W   FRR L +RE ++W ++L +  + R+N G    +W+
Subjt:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM

TYK03140.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-2534.55Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------
        R FLW+   +  GSHL+ W  +++SKE GGLGI ++  TN ALL KW+WRY +EP  LWR LI  KY    P  +P+    +S+++PW            
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------

Query:  ---FQITKMEQIVFMNMNCSMRN------------VEDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISW
           + +   +QI F   N S+                D+ ++V D W      WN  FRR L +RE++ W ++L     PRSN G    +W
Subjt:  ---FQITKMEQIVFMNMNCSMRN------------VEDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISW

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-2634.38Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------
        R FLW+      GSHL+ W+++T+ KE GGLGI +++ TN ALL KW+WRY++EP  LWR LI  KY    P  +P+    +S+++PW            
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------

Query:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM
           + +   +QI F   N S                 D+  ++ DVW  N   W   FRR L +RE ++W ++L +  VPR+N G    +W+
Subjt:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM

TYK05808.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-2533.33Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------
        R FLW+      GSHL+ W+++T+ KE GGLGI +++  N ALL KW+WRY++EP  LWR LI  KY    P  +P+    +S+++PW            
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------

Query:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM
           + +   +QI F   N S                 D+  ++ DVW  N   W   FRR L +RE ++W  +L + ++PR+N G    +W+
Subjt:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM

TrEMBL top hitse value%identityAlignment
A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein4.6e-2536.79Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPWFQITKME-----
        R FLW   E +  +HL+ WN+ T  KE+GGLGI K++ TN ALL KW+WRYHNE   LW+  ID+KY K     +P   + +SA SPW  I K +     
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPWFQITKME-----

Query:  QIVFM----------------NMNCSMR--------NVEDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISW
        +I +M                N+  S++        N++    TV ++W +   DWN E RR L EREQ +W  +  S     +N G+   SW
Subjt:  QIVFM----------------NMNCSMR--------NVEDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISW

A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein2.1e-2534.44Show/hide
Query:  GSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW---------------FQITKMEQI
        GSHL+ W+++T+ KE GGLGI +++ TN ALL KW+WRYH+EP  LWR LI  KY    P  +P+    +S+++PW               + +   +QI
Subjt:  GSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW---------------FQITKMEQI

Query:  VFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM
         F   N S                 D+  ++ DVW  N   W   FRR L +RE ++W ++L +  +PR+N G    +W+
Subjt:  VFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM

A0A5D3BVM7 LINE-1 retrotransposable element ORF2 protein1.2e-2534.55Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------
        R FLW+   +  GSHL+ W  +++SKE GGLGI ++  TN ALL KW+WRY +EP  LWR LI  KY    P  +P+    +S+++PW            
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------

Query:  ---FQITKMEQIVFMNMNCSMRN------------VEDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISW
           + +   +QI F   N S+                D+ ++V D W      WN  FRR L +RE++ W ++L     PRSN G    +W
Subjt:  ---FQITKMEQIVFMNMNCSMRN------------VEDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISW

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein1.9e-2634.38Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------
        R FLW+      GSHL+ W+++T+ KE GGLGI +++ TN ALL KW+WRY++EP  LWR LI  KY    P  +P+    +S+++PW            
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------

Query:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM
           + +   +QI F   N S                 D+  ++ DVW  N   W   FRR L +RE ++W ++L +  VPR+N G    +W+
Subjt:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM

A0A5D3C3M3 LINE-1 retrotransposable element ORF2 protein7.1e-2633.33Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------
        R FLW+      GSHL+ W+++T+ KE GGLGI +++  N ALL KW+WRY++EP  LWR LI  KY    P  +P+    +S+++PW            
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPW------------

Query:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM
           + +   +QI F   N S                 D+  ++ DVW  N   W   FRR L +RE ++W  +L + ++PR+N G    +W+
Subjt:  ---FQITKMEQIVFMNMNCSMRNV------------EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWM

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.9e-0838.81Show/hide
Query:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKY
        RTFLW    ++   HLV+W+ +   K+ GGLG+   +  N AL+ K  WR   E   LW L++  KY
Subjt:  RTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACTTTCTTATGGGAAGTCATTGAAAAAGAAGGGGGCTCTCACCTTGTTCGATGGAACTTGATTACTCGGTCTAAAGAAATCGGTGGTCTTGGTATCGACAAAAT
TCGTCATACCAACGATGCTCTCCTTGGTAAATGGATCTGGAGATACCATAATGAACCTACTCAACTATGGAGATTGCTAATAGATAGCAAATATATGAAGGTACCTCCCT
TATCAGTTCCAAATTGTTGCAAATTCACTAGTGCTAGATCCCCTTGGTTTCAGATTACTAAAATGGAACAGATTGTCTTCATGAATATGAATTGTTCTATGCGCAATGTT
GAAGATGAGTACATGACTGTTTCTGATGTTTGGAAGGAGAACTTGGCAGATTGGAACCCTGAGTTTAGAAGATCTCTGCTGGAAAGAGAACAAGCTTCGTGGCATCAACT
GTTGAGCTCCTGGACTGTTCCAAGATCGAATTCAGGAGTGGACATTATTTCTTGGATGCAGATGGTAAACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAACTTTCTTATGGGAAGTCATTGAAAAAGAAGGGGGCTCTCACCTTGTTCGATGGAACTTGATTACTCGGTCTAAAGAAATCGGTGGTCTTGGTATCGACAAAAT
TCGTCATACCAACGATGCTCTCCTTGGTAAATGGATCTGGAGATACCATAATGAACCTACTCAACTATGGAGATTGCTAATAGATAGCAAATATATGAAGGTACCTCCCT
TATCAGTTCCAAATTGTTGCAAATTCACTAGTGCTAGATCCCCTTGGTTTCAGATTACTAAAATGGAACAGATTGTCTTCATGAATATGAATTGTTCTATGCGCAATGTT
GAAGATGAGTACATGACTGTTTCTGATGTTTGGAAGGAGAACTTGGCAGATTGGAACCCTGAGTTTAGAAGATCTCTGCTGGAAAGAGAACAAGCTTCGTGGCATCAACT
GTTGAGCTCCTGGACTGTTCCAAGATCGAATTCAGGAGTGGACATTATTTCTTGGATGCAGATGGTAAACAAATAA
Protein sequenceShow/hide protein sequence
MRTFLWEVIEKEGGSHLVRWNLITRSKEIGGLGIDKIRHTNDALLGKWIWRYHNEPTQLWRLLIDSKYMKVPPLSVPNCCKFTSARSPWFQITKMEQIVFMNMNCSMRNV
EDEYMTVSDVWKENLADWNPEFRRSLLEREQASWHQLLSSWTVPRSNSGVDIISWMQMVNK