; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10012098 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012098
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionC2H2-like zinc finger protein
Genome locationChr01:17629437..17629985
RNA-Seq ExpressionHG10012098
SyntenyHG10012098
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066236.1 protein LATE FLOWERING-like [Cucumis melo var. makuwa]4.3e-6884.15Show/hide
Query:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHP-GILPHPVYIATHGGNLHCF
        MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S          SPF+AP SLVFAAS QQHHP G+LPHPVYIATHG NLHCF
Subjt:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHP-GILPHPVYIATHGGNLHCF

Query:  PNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        PNNQQLLYENMV+CGGVCSSNRYH    +DEENLLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  PNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_008447640.1 PREDICTED: protein LATE FLOWERING-like [Cucumis melo]3.4e-7380.53Show/hide
Query:  MEYEEKLSQVA--ETNNN-----VVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAAS
        MEYEE LS+V   ETNNN     V+EMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S          SPF+AP SLVFAAS
Subjt:  MEYEEKLSQVA--ETNNN-----VVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAAS

Query:  HQQHHP-GILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
         QQHHP G+LPHPVYIATHG NLHCFPNNQQLLYENMV+CGGVCSSNRYH    +DEENLLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  HQQHHP-GILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_022996351.1 protein LATE FLOWERING-like [Cucurbita maxima]5.5e-5567.02Show/hide
Query:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG
        ME EE+  QVAE+++  VEMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDYSSS+T+      S P +     VFA + Q HHP 
Subjt:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG

Query:  ILPHPVYIATHGGNLHCFPNNQQLLY---------ENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        ILPHP+YIA HG NLHCFPN+QQ+ Y         E+MVY GGVCS NRY  QC EDEEN+LNW+RSIKK       DKEKEQKLDLSLHL
Subjt:  ILPHPVYIATHGGNLHCFPNNQQLLY---------ENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_031739318.1 protein LATE FLOWERING [Cucumis sativus]1.5e-7380.42Show/hide
Query:  MEYEEKLSQVA--ETNNN-----VVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAAS
        MEYEE LS+V   ETN+N     VVEMEE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S          SPF AP SLVFAAS
Subjt:  MEYEEKLSQVA--ETNNN-----VVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAAS

Query:  HQQHHPGILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
         QQHHPG+LPHPVYIATHG NLHCFPNNQQLLYENMV+CGGVC SNRYH    +DEENLLNWER+IKKDLSRINHDKEKEQKLDLSLHL
Subjt:  HQQHHPGILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]4.0e-8287.57Show/hide
Query:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFS---SPFTAPASLVFAASHQQH
        MEYEEKLSQVAETNNN+VEMEETP+RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS        TNFS   SPF AP SLVF ASHQQH
Subjt:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFS---SPFTAPASLVFAASHQQH

Query:  HPGILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        HPG+LP PVYIATHG NLHCFPNNQQLLYENMVYCGGVC+SNRY HQC  DEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
Subjt:  HPGILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein5.5e-6984.05Show/hide
Query:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPGILPHPVYIATHGGNLHCFP
        MEE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S          SPF AP SLVFAAS QQHHPG+LPHPVYIATHG NLHCFP
Subjt:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPGILPHPVYIATHGGNLHCFP

Query:  NNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        NNQQLLYENMV+CGGVC SNRYH    +DEENLLNWER+IKKDLSRINHDKEKEQKLDLSLHL
Subjt:  NNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A1S3BIU8 protein LATE FLOWERING-like1.6e-7380.53Show/hide
Query:  MEYEEKLSQVA--ETNNN-----VVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAAS
        MEYEE LS+V   ETNNN     V+EMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S          SPF+AP SLVFAAS
Subjt:  MEYEEKLSQVA--ETNNN-----VVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAAS

Query:  HQQHHP-GILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
         QQHHP G+LPHPVYIATHG NLHCFPNNQQLLYENMV+CGGVCSSNRYH    +DEENLLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  HQQHHP-GILPHPVYIATHGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A5A7VIQ7 Protein LATE FLOWERING-like2.1e-6884.15Show/hide
Query:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHP-GILPHPVYIATHGGNLHCF
        MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S          SPF+AP SLVFAAS QQHHP G+LPHPVYIATHG NLHCF
Subjt:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHP-GILPHPVYIATHGGNLHCF

Query:  PNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        PNNQQLLYENMV+CGGVCSSNRYH    +DEENLLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  PNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING2.6e-5567.02Show/hide
Query:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG
        ME EE+  QVAE+++  VEMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+SDYSSS++       SS  + P S VFA + Q HHP 
Subjt:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG

Query:  ILPHPVYIATHGGNLHCFPNNQQLLY---------ENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        ILPHPVYIA HG NLHCFPNNQQ+ Y         E+MVY GGVCS NRY  QC EDE+++LNW+RSIKK       DKEKEQKLDLSLHL
Subjt:  ILPHPVYIATHGGNLHCFPNNQQLLY---------ENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A6J1K4H5 protein LATE FLOWERING-like2.6e-5567.02Show/hide
Query:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG
        ME EE+  QVAE+++  VEMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDYSSS+T+      S P +     VFA + Q HHP 
Subjt:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG

Query:  ILPHPVYIATHGGNLHCFPNNQQLLY---------ENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        ILPHP+YIA HG NLHCFPN+QQ+ Y         E+MVY GGVCS NRY  QC EDEEN+LNW+RSIKK       DKEKEQKLDLSLHL
Subjt:  ILPHPVYIATHGGNLHCFPNNQQLLY---------ENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 23.4e-0744.74Show/hide
Query:  LSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPF
        +S  + ++ N     E P RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +   S++  +     FS  F
Subjt:  LSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPF

Q39263 Zinc finger protein 44.7e-0944.58Show/hide
Query:  LSQVAETNNNVVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPA
        LS  +E++N   + ++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+          +++N+++  TA A
Subjt:  LSQVAETNNNVVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPA

Q39266 Zinc finger protein 74.4e-0736.11Show/hide
Query:  KLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQ--QHHPGILP
        KL+     +    + E  P RVF C +C RKF SSQALGGHQNAHK+ERT A++A  +             +   P+T  +S +   +H    HH    P
Subjt:  KLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQ--QHHPGILP

Query:  HPVYIATH
         P+    H
Subjt:  HPVYIATH

Q9FFX4 Zinc finger protein KNUCKLES8.9e-0873.53Show/hide
Query:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK
        R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Subjt:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK

Q9FKA9 Protein LATE FLOWERING3.6e-1737.23Show/hide
Query:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG
        +E EE++    E N    +   +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+          N     T P   VF +S  QHH  
Subjt:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG

Query:  ILPHPVYIATHGGNLHCFP--NNQQLLYENMVYCGGVCSSNRYHH----QCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        IL +P        ++ CFP  +    ++++      + +S++        C +   ++L+   ++      +N DK K+Q LDLSLHL
Subjt:  ILPHPVYIATHGGNLHCFP--NNQQLLYENMVYCGGVCSSNRYHH----QCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 73.1e-0836.11Show/hide
Query:  KLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQ--QHHPGILP
        KL+     +    + E  P RVF C +C RKF SSQALGGHQNAHK+ERT A++A  +             +   P+T  +S +   +H    HH    P
Subjt:  KLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQ--QHHPGILP

Query:  HPVYIATH
         P+    H
Subjt:  HPVYIATH

AT1G66140.1 zinc finger protein 43.3e-1044.58Show/hide
Query:  LSQVAETNNNVVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPA
        LS  +E++N   + ++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+          +++N+++  TA A
Subjt:  LSQVAETNNNVVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPA

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein6.3e-0973.53Show/hide
Query:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK
        R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Subjt:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK

AT5G48890.1 C2H2-like zinc finger protein2.6e-1837.23Show/hide
Query:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG
        +E EE++    E N    +   +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+          N     T P   VF +S  QHH  
Subjt:  MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPG

Query:  ILPHPVYIATHGGNLHCFP--NNQQLLYENMVYCGGVCSSNRYHH----QCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        IL +P        ++ CFP  +    ++++      + +S++        C +   ++L+   ++      +N DK K+Q LDLSLHL
Subjt:  ILPHPVYIATHGGNLHCFP--NNQQLLYENMVYCGGVCSSNRYHH----QCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

AT5G57520.1 zinc finger protein 22.4e-0844.74Show/hide
Query:  LSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPF
        +S  + ++ N     E P RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +   S++  +     FS  F
Subjt:  LSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATATGAAGAGAAGCTTTCACAAGTAGCTGAAACCAACAACAATGTTGTTGAAATGGAAGAAACCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGAAAGTT
TCAAAGCTCTCAAGCTTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACCGCCGCGAGAAAAGCGAAGCGAATTTCCGACTACTCGTCGTCGACGACCACGACCA
CGACGACTAATTTCTCATCGCCGTTCACGGCCCCGGCATCGTTGGTTTTTGCAGCCAGTCATCAACAACATCATCCAGGGATATTGCCACATCCTGTTTATATTGCTACT
CATGGGGGTAATCTTCATTGTTTTCCAAATAACCAACAATTGTTGTATGAAAACATGGTTTATTGTGGTGGGGTTTGTTCAAGCAATAGATATCATCATCAATGTGTGGA
AGATGAAGAAAATTTGTTGAATTGGGAGAGAAGCATAAAGAAGGATCTTAGTAGGATAAATCATGATAAGGAAAAAGAACAAAAACTTGATCTTTCTCTCCATTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATATGAAGAGAAGCTTTCACAAGTAGCTGAAACCAACAACAATGTTGTTGAAATGGAAGAAACCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGAAAGTT
TCAAAGCTCTCAAGCTTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACCGCCGCGAGAAAAGCGAAGCGAATTTCCGACTACTCGTCGTCGACGACCACGACCA
CGACGACTAATTTCTCATCGCCGTTCACGGCCCCGGCATCGTTGGTTTTTGCAGCCAGTCATCAACAACATCATCCAGGGATATTGCCACATCCTGTTTATATTGCTACT
CATGGGGGTAATCTTCATTGTTTTCCAAATAACCAACAATTGTTGTATGAAAACATGGTTTATTGTGGTGGGGTTTGTTCAAGCAATAGATATCATCATCAATGTGTGGA
AGATGAAGAAAATTTGTTGAATTGGGAGAGAAGCATAAAGAAGGATCTTAGTAGGATAAATCATGATAAGGAAAAAGAACAAAAACTTGATCTTTCTCTCCATTTATAG
Protein sequenceShow/hide protein sequence
MEYEEKLSQVAETNNNVVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTTTTTTNFSSPFTAPASLVFAASHQQHHPGILPHPVYIAT
HGGNLHCFPNNQQLLYENMVYCGGVCSSNRYHHQCVEDEENLLNWERSIKKDLSRINHDKEKEQKLDLSLHL