CuGenDBv2

Gene ID	HG10012099
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription initiation factor IIF subunit alpha
Genome location	Chr01:17632537..17636874
RNA-Seq Expression	HG10012099
Synteny	HG10012099
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0001096 - TFIIF-class transcription factor complex binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domains	IPR008851 - Transcription initiation factor IIF, alpha subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6606328.1 Transcription initiation factor IIF subunit alpha, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-238

84.97

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLN-------------------------KKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLN                         KKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLN-------------------------KKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDD-DDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKP
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGE++ DDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDD-DDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKP

Query:  TPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFK
         PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  TPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_004152016.1 transcription initiation factor IIF subunit alpha isoform X1 [Cucumis sativus]

2.5e-248

87.55

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLK SCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASAS+DKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGEDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPT
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT

Query:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
        PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESK+TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
Subjt:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA

Query:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_016900419.1 PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alpha [Cucumis melo]

2.8e-247

87.36

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AE KMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGEDD+DDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPT
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT

Query:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
        PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE K TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
Subjt:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA

Query:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        RLRTPEDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Subjt:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022931161.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita moschata]

1.4e-238

85.16

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLNK                         KGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKP
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG E+DDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKP

Query:  TPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFK
         PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  TPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_038888042.1 transcription initiation factor IIF subunit alpha isoform X1 [Benincasa hispida]

6.0e-250

88.66

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDL+LKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKE VGTSGRGRRKPTGDENEGN SDRGEEDEEEEAQRKNRLGLNK                         KGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT
        TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGEDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPT
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT

Query:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
        PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDE V TSKSTASKGAPA VKTEPA+HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
Subjt:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA

Query:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCA6 Transcription initiation factor IIF subunit alpha

1.2e-248

87.55

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLK SCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASAS+DKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGEDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPT
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT

Query:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
        PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESK+TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
Subjt:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA

Query:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A1S4DWR2 Transcription initiation factor IIF subunit alpha

1.3e-247

87.36

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AE KMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+K                         KGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGEDD+DDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPT
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPT

Query:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
        PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE K TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
Subjt:  PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA

Query:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        RLRTPEDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Subjt:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1E3E1 Transcription initiation factor IIF subunit alpha

3.7e-237

84.39

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLKPSCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFS+KRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK------------------------KGDDWEHEEIFTDDDETT
        GPAAFGEVEKFDDK++VG SGRGRRK TGDENEGNASDRGEEDEEEEA RKNRLGLNK                        KGDDWEHEEIFTDDDETT
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK------------------------KGDDWEHEEIFTDDDETT

Query:  APDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTP
        APDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGL DSDGEDDDDDDD +ED GGTPV+ SKQKDTVKEEAAASSPSKP P
Subjt:  APDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTP

Query:  SGSAKGTPSTAKTAKGKRK-NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
        SGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+SKSTDEGV TSKSTASKGAPASVKTE A  SGPVTEEEIRAVLRQRTPVTTQDLVAKFKA
Subjt:  SGSAKGTPSTAKTAKGKRK-NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKA

Query:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        RLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  RLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1ESX1 Transcription initiation factor IIF subunit alpha

6.7e-239

85.16

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Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLNK                         KGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNK-------------------------KGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKP
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGL DSDG E+DDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKP

Query:  TPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFK
         PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  TPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1K1N5 Transcription initiation factor IIF subunit alpha

2.2e-237

84.13

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Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL+CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIP                    AEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKK--------------------------GDDWEHEEIFTDDDE
        GPAAFGEVEKFDDK+S+G +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLNKK                          GDDWEHEEIFTDDDE
Subjt:  GPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKK--------------------------GDDWEHEEIFTDDDE

Query:  TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG---EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSP
        TTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRR+GGL DSDG   EDDDDDDDA+E++GGTPV PSKQKD VKEEAAA+SP
Subjt:  TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG---EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSP

Query:  SKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVA
        SKP PSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEG+ TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVA
Subjt:  SKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVA

Query:  KFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

SwissProt top hits

e value

%identity

Alignment

Q54WV4 General transcription factor IIF subunit 1

1.4e-07

24.82

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Query:  KNRPWLLEDETGQFQFQGHLEGSQ-SATYYLLVLQG------------------KEFTAIPAEEK---MKNRKKTADGYERWMMKAASNGPAAFGEVEKF
        K  PW LED  G   +QG++EG+Q S+ Y+L + Q                   KEF ++  EE    MK + +  D +   + K      +  G  E  
Subjt:  KNRPWLLEDETGQFQFQGHLEGSQ-SATYYLLVLQG------------------KEFTAIPAEEK---MKNRKKTADGYERWMMKAASNGPAAFGEVEKF

Query:  DDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNR--LGLNKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEG
          K          R    D N    ++  ++ ++  A+R+ R   G  + GD  + E  F DDD+ T  D    + L  E     +I++DE++ED +   
Subjt:  DDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNR--LGLNKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEG

Query:  EGGLSKSGKELKKLLRRTGGLTDSDGE--DDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPST-----------AKTAKGKRKN
           L++ G E+KK++++     DS+ +  DDDD  D +  TGG       + D   ++   S+  K     +A GT ++           +K++K  +K 
Subjt:  EGGLSKSGKELKKLLRRTGGLTDSDGE--DDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPST-----------AKTAKGKRKN

Query:  GEDVKPSSAPPKKMKTETESKSTD------EGVPTSKSTASKGAPASVKTEPA----THSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAF
         +D  P S   K  K +++S   +      +  P+S       +P+  + +       +  P TEE I+ VL++   V + DL+  FK  L+ P++K  F
Subjt:  GEDVKPSSAPPKKMKTETESKSTD------EGVPTSKSTASKGAPASVKTEPA----THSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAF

Query:  AEILRRISRIQKTNG
          ++  ++R+ + NG
Subjt:  AEILRRISRIQKTNG

Q9SU25 Transcription initiation factor IIF subunit alpha

1.1e-150

59.56

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Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS  L L  SC GCGS ++LYGS+C+HMTLCL CG+TMA+NK KC++CG        EYNVRA+A +DKNYFIGRF++GLPNF  K+ +ENKWSL KD  
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN
        QGRQ TDA REK KN+PW+LEDETGQFQ+QGHLEGSQSATYYLLV+Q KEF AIP                    AEEKMKNR+KTADGY+RWMMKAA+N
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIP--------------------AEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK------------------------KGDDWEHEEIFTDD
        GPA FGEV+  ++KES GTS   GRGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+                        KGDDWEHEEIFTDD
Subjt:  GPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK------------------------KGDDWEHEEIFTDD

Query:  DETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSP
        DE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKSGKELKKLL +  GL +SD +DDDD DD +E   GT V  SKQK+  KEE   ++P
Subjt:  DETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSP

Query:  SKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------HSGPVTEEEIRAVLRQR
        +KP PSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPA+         +GPVTE+EIRAVL ++
Subjt:  SKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------HSGPVTEEEIRAVLRQR

Query:  TPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK
          VTTQDLV++FKARL+T EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  TPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK

Arabidopsis top hits

e value

%identity

Alignment

AT4G12610.1 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

7.9e-91

57.92

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Query:  VLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK--
        V Q K+ T   AEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   GRGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+  
Subjt:  VLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK--

Query:  ----------------------KGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG
                              KGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKSGKELKKLL +  GL +SD 
Subjt:  ----------------------KGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG

Query:  EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKG
        +DDDD DD +E   GT V  SKQK+  KEE   ++P+KP PSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S  
Subjt:  EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKG

Query:  APASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK
           +VK EPA+         +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  APASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK

AT4G12610.2 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

7.9e-91

57.92

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Query:  VLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK--
        V Q K+ T   AEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   GRGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+  
Subjt:  VLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNK--

Query:  ----------------------KGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG
                              KGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKSGKELKKLL +  GL +SD 
Subjt:  ----------------------KGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDG

Query:  EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKG
        +DDDD DD +E   GT V  SKQK+  KEE   ++P+KP PSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S  
Subjt:  EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKG

Query:  APASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK
           +VK EPA+         +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  APASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGTTCGATTTGCTGCTGAAGCCATCGTGTAGTGGATGCGGATCCACGACGGAGTTGTATGGGAGCAATTGCAAGCACATGACATTGTGCTTGACCTGTGGAAAAAC
TATGGCTGAGAACAAAGGCAAATGTTATGACTGTGGCGCTACTGAATACAATGTTCGAGCAAGTGCAAGTAGCGACAAGAACTACTTCATCGGTAGGTTCATGAGTGGGC
TGCCGAACTTTTCGAAGAAGAGAAATGCTGAGAATAAATGGTCTCTTTACAAGGATGGTCTACAAGGACGCCAACTTACGGATGCCCTTCGGGAAAAGTATAAGAATAGA
CCCTGGCTGTTGGAAGATGAAACGGGCCAATTTCAATTCCAAGGTCATCTTGAGGGCTCACAATCAGCAACATACTACTTGCTTGTATTGCAAGGAAAGGAATTTACTGC
CATTCCTGCAGAAGAAAAAATGAAGAATCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCTGCATTTGGTGAGGTTGAGA
AGTTTGATGACAAAGAAAGTGTTGGTACTAGTGGTAGGGGACGGAGAAAACCTACTGGTGATGAGAATGAAGGCAATGCCTCGGATAGGGGAGAAGAAGATGAAGAAGAG
GAGGCACAGAGGAAGAACAGATTGGGACTCAATAAAAAGGGAGACGATTGGGAGCACGAAGAGATTTTTACTGATGATGATGAAACTACTGCTCCGGATCGTGAAGAAAG
GGAGGATTTAGCCCCTGAAGTTCCTGCACCTCCAGAAATCAAGCAGGATGAAGACGATGAGGATGAAGAAAATGAAGGGGAGGGGGGGCTGAGCAAATCTGGGAAAGAGT
TGAAGAAATTGCTTAGGCGTACTGGGGGGCTTACTGATTCAGATGGAGAGGATGATGACGATGATGACGATGCGGATGAGGATACTGGTGGCACTCCCGTCTTACCTTCG
AAGCAGAAGGATACAGTTAAAGAAGAAGCTGCAGCCAGCAGTCCCTCAAAACCAACGCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGGGAA
GAGGAAAAATGGTGAGGATGTGAAACCATCCAGTGCACCTCCAAAGAAAATGAAAACAGAGACGGAATCGAAGTCCACAGATGAAGGTGTACCTACTTCTAAAAGTACGG
CCTCAAAAGGTGCACCAGCATCGGTCAAAACTGAACCAGCAACGCATTCTGGACCCGTTACTGAGGAGGAAATTAGGGCTGTTTTGCGGCAAAGGACACCTGTAACTACA
CAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGAACTCCAGAGGACAAGAATGCTTTTGCAGAAATACTTAGGAGAATTTCAAGGATTCAAAAGACGAACGGAGGACC
GAGTTACGTTGTGCTGAGAAAACCTGAAGACTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATEYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALREKYKNR
PWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEE
EAQRKNRLGLNKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLTDSDGEDDDDDDDADEDTGGTPVLPS
KQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTT
QDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

HG10012099 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome