CuGenDBv2

Gene ID	HG10012102
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U6 snRNA-associated Sm-like protein LSm5
Genome location	Chr01:17714688..17721098
RNA-Seq Expression	HG10012102
Synteny	HG10012102
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009737 - response to abscisic acid (biological process) GO:0005681 - spliceosomal complex (cellular component) GO:0005688 - U6 snRNP (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0120115 - Lsm2-8 complex (cellular component) GO:1990726 - Lsm1-7-Pat1 complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR033871 - Sm-like protein LSm5

Homology

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GenBank top hits

e value

%identity

Alignment

KAF3336879.1 U6 snRNA-associated Sm-like protein LSm5 [Carex littledalei]

5.0e-20

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIKQIIRVAR
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIK +  + R
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIKQIIRVAR

KAF9665810.1 hypothetical protein SADUNF_Sadunf16G0162400 [Salix dunnii]

1.5e-19

96.3

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIKQ
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI +
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIKQ

KYP49644.1 U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan]

1.9e-19

100

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

ONK78576.1 uncharacterized protein A4U43_C02F20270 [Asparagus officinalis]

1.1e-19

85.48

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI-KQIIRVARL
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI  ++IR++ +
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI-KQIIRVARL

PKU66788.1 hypothetical protein MA16_Dca015048 [Dendrobium catenatum]

1.5e-19

98.11

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIK
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI+
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIK

TrEMBL top hits

e value

%identity

Alignment

A0A0B0NQ45 U6 snRNA-associated Sm-like protein LSm5

9.2e-20

100

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

A0A2I0VTP8 U6 snRNA-associated Sm-like protein LSm5

7.1e-20

98.11

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIK
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI+
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIK

A0A2P5WT65 U6 snRNA-associated Sm-like protein LSm5

9.2e-20

100

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

A0A5P1FJU5 U6 snRNA-associated Sm-like protein LSm5

5.4e-20

85.48

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI-KQIIRVARL
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI  ++IR++ +
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI-KQIIRVARL

A0A7I8L1V7 U6 snRNA-associated Sm-like protein LSm5

9.2e-20

100

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

SwissProt top hits

e value

%identity

Alignment

P62322 U6 snRNA-associated Sm-like protein LSm5

1.9e-17

82.69

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q2HJH0 U6 snRNA-associated Sm-like protein LSm5

1.9e-17

82.69

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q5R628 U6 snRNA-associated Sm-like protein LSm5

1.9e-17

82.69

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q9FKB0 Sm-like protein LSM5

3.6e-21

94.23

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q9Y4Y9 U6 snRNA-associated Sm-like protein LSm5

1.9e-17

82.69

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Arabidopsis top hits

e value

%identity

Alignment

AT5G48870.1 Small nuclear ribonucleoprotein family protein

2.6e-22

94.23

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Query:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI
Subjt:  MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Sequences

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CDS sequence

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ATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTCGATGTTTATGTCAACATGGTCCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGAT
AACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTAAGCAGATAATAAGAGTTGCGAGATTGAAAGTGAGAGAGCAAGGAGAGAGAGTTGAGAGTTGA

mRNA sequence

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Protein sequence

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MKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIKQIIRVARLKVREQGERVES

HG10012102 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome