CuGenDBv2

Gene ID	HG10012105
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein FAM98A-like isoform X1
Genome location	Chr01:17751436..17757919
RNA-Seq Expression	HG10012105
Synteny	HG10012105
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR002775 - DNA/RNA-binding protein Alba-like IPR036882 - Alba-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6606323.1 Ribonuclease P protein subunit p25-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-70

88.69

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE
        EGL+PVEMTRHVSMISITLSNRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE

KAG7036262.1 Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-70

88.69

Show/hide

Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE
        EGL+PVEMTRHVSMISITLSNRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE

XP_022159880.1 protein FAM98A-like [Momordica charantia]

1.8e-70

89.82

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIV KAMGQAISKAVAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN----QQQQPRQSRPYYNAVNEE
        EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAP FVEQPKQQ+N    QQQQPRQ+RPYYNAVNE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN----QQQQPRQSRPYYNAVNEE

XP_022930955.1 glycine-rich RNA-binding protein 10-like [Cucurbita moschata]

1.8e-70

88.69

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE
        EGL+PVEMTRHVSMISITLSNRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE

XP_038887999.1 ribonuclease P protein subunit p25-like isoform X9 [Benincasa hispida]

1.9e-72

90.64

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQ--QQPRQSRPYYNAVNEECVENDQ
        EGLVPVEMTRHVSMISITLSNRELNKNSPGYQA QFVEQPKQQYNQQ  QQPRQSRPYYNAVNE+     Q
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQ--QQPRQSRPYYNAVNEECVENDQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E011 protein FAM98A-like

8.7e-71

89.82

Show/hide

Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIV KAMGQAISKAVAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN----QQQQPRQSRPYYNAVNEE
        EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAP FVEQPKQQ+N    QQQQPRQ+RPYYNAVNE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN----QQQQPRQSRPYYNAVNEE

A0A6J1EY76 glycine-rich RNA-binding protein 10-like

8.7e-71

88.69

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE
        EGL+PVEMTRHVSMISITLSNRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE

A0A6J1HFQ0 protein FAM98A isoform X3

2.5e-70

90.3

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK V+IAEILK       KRTP+LHQETSISSVSI DVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQY--NQQQQPRQSRPYYNAVNEE
        EGLVPVEMTRHVSMISITLSNRELNK+SPGYQAPQFVEQPKQQY   QQQQPRQSRPYYNAVNE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQY--NQQQQPRQSRPYYNAVNEE

A0A6J1HRM7 protein FAM98A-like isoform X1

6.2e-69

88.48

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESP+N+NEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK V+IAEILK       KRTP+LHQETSISSVSI DVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQY--NQQQQPRQSRPYYNAVNEE
        EGLVPVEMTR+VSMISITLSNRELNK+SPGYQAPQFVEQPKQQY   QQQQPRQSRPYYNAVNE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQY--NQQQQPRQSRPYYNAVNEE

A0A6J1K2C9 protein FAM98A-like

1.9e-70

89.16

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQKVEKPKPESPI+ENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILK       KRTPRLHQETSISSVSITDVWEPIE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN---QQQQPRQSRPYYNAVNEE
        EGL+PVEMTRHVSMISITLSNRELNKN+PGYQAP  VEQPKQQYN   QQQQPRQSRPYYNA+NE+
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN---QQQQPRQSRPYYNAVNEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G20220.1 Alba DNA/RNA-binding protein

2.5e-38

58.16

Show/hide

Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K+V I E++K       +R P LHQ TSI S  ITD WEP E
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPK
        EGL  +E TRHVSMI+ITLS  +LN +S GYQ P  +E  K
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPK

AT1G76010.1 Alba DNA/RNA-binding protein

3.0e-39

57.42

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+K V I E++K       +R P LHQ TSI S  ITD WEP E
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRP
        EGL+P+E TRHVSMI+ITLS  ELN +S GYQ P  +E  K   +   + R+  P
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRP

AT3G07030.1 Alba DNA/RNA-binding protein

3.6e-53

70.55

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Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE
        MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISK VAI+EILK        + P LHQ+ +ISS+SITDVWEP E
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIE

Query:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRPYYNAVNEE
        EGL PVE+TRHVSMISITLS  ELNK+SPGYQAP   +Q K QY Q QQ RQ+R  YNA  EE
Subjt:  EGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRPYYNAVNEE

Sequences

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CDS sequence

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ATGGATAGGTACCAGAAGGTCGAGAAACCTAAACCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGTCAAGGCGCTATTCGTAACTACATCACTTATGCTTC
CACCCTGCTTCAGGACAAACGTGTTAGGGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCGGTTGCCATTGCAGAAATTTTAAAGGCCAGTTTCATTCTGA
AACAGAAGAGAACTCCACGATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTGTACCTGTGGAGATGACTCGT
CATGTCTCAATGATATCAATTACCTTGTCAAATCGAGAACTAAATAAAAACTCTCCTGGGTATCAAGCTCCACAATTCGTGGAGCAGCCAAAGCAACAATATAATCAGCA
GCAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAATGAAGAATGTGTTGAAAACGATCAAGTGTGGTTAGGATGGATCAAGCTGAGTTGTTCTAATCAATTGC
ATTCCTTTCAGGAACTGGCTATGATAGAGGCAGAGGGGGTAGGAGTTACAGTCGAGGTCGGGGACGGATAG

mRNA sequence

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Protein sequence

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MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTR
HVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRPYYNAVNEECVENDQVWLGWIKLSCSNQLHSFQELAMIEAEGVGVTVEVGDG

HG10012105 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome