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HG10012177 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012177
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr01:18409270..18410834
RNA-Seq ExpressionHG10012177
SyntenyHG10012177
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035255.1 choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa]7.5e-0533.73Show/hide
Query:  WTLNFRRHFKEEEITECAAFTHFIPNIELTGSSDSWTWKLDKN-YFSTKPLYTFITPSGPSITEEFYKKIWRCPCPKRILTVG
        W +++RR+ +E E  +  A    +  +  T S D WTW LDKN  FS+K L T +  +G       +  IW    PKR  + G
Subjt:  WTLNFRRHFKEEEITECAAFTHFIPNIELTGSSDSWTWKLDKN-YFSTKPLYTFITPSGPSITEEFYKKIWRCPCPKRILTVG

TYK03140.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.8e-0531.76Show/hide
Query:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAFTHF------
        MD LSR+LS    SG I G  +   + NI H+LFADD L F  +N+  + NL +   L+       I L    L    +  E    ECA+F  +      
Subjt:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAFTHF------

Query:  IPNIELTGSSDSWTWKLDKNYFSTKPLYTFITPSGPSITEEFYKKIWR
         P  E    S      L K+  S+ P+Y       PS+T +  +K WR
Subjt:  IPNIELTGSSDSWTWKLDKNYFSTKPLYTFITPSGPSITEEFYKKIWR

TrEMBL top hitse value%identityAlignment
A0A2N9HXR7 Reverse transcriptase domain-containing protein9.0e-0450.94Show/hide
Query:  MDCLSRILSLAAESGFICGYDMPQTS-INIDHLLFADDTLPFSTNNEEKIENL
        M+ LSR+LS A E GFI GYD+ QT+ ++I H LFADDTL F   + +++ +L
Subjt:  MDCLSRILSLAAESGFICGYDMPQTS-INIDHLLFADDTLPFSTNNEEKIENL

A0A5A7T1C2 Choline-phosphate cytidylyltransferase3.6e-0533.73Show/hide
Query:  WTLNFRRHFKEEEITECAAFTHFIPNIELTGSSDSWTWKLDKN-YFSTKPLYTFITPSGPSITEEFYKKIWRCPCPKRILTVG
        W +++RR+ +E E  +  A    +  +  T S D WTW LDKN  FS+K L T +  +G       +  IW    PKR  + G
Subjt:  WTLNFRRHFKEEEITECAAFTHFIPNIELTGSSDSWTWKLDKN-YFSTKPLYTFITPSGPSITEEFYKKIWRCPCPKRILTVG

A0A5D3BVM7 LINE-1 retrotransposable element ORF2 protein4.8e-0531.76Show/hide
Query:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAFTHF------
        MD LSR+LS    SG I G  +   + NI H+LFADD L F  +N+  + NL +   L+       I L    L    +  E    ECA+F  +      
Subjt:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAFTHF------

Query:  IPNIELTGSSDSWTWKLDKNYFSTKPLYTFITPSGPSITEEFYKKIWR
         P  E    S      L K+  S+ P+Y       PS+T +  +K WR
Subjt:  IPNIELTGSSDSWTWKLDKNYFSTKPLYTFITPSGPSITEEFYKKIWR

A0A5D3C104 LINE-1 retrotransposable element ORF2 protein4.0e-0431.51Show/hide
Query:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAF----THFIP
        MD LSR+LS    SG I G  +  ++ NI H+LFA D L F  +N+  + NL +   L+       I L    L    +       ECA+F     H +P
Subjt:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAF----THFIP

Query:  NIELTGSSDSWTWKLDKNYFSTKPLYTFITPSGPSITEEFYKKIWR
         +   G S      L K+  S+ P+Y       PS+T +  +K WR
Subjt:  NIELTGSSDSWTWKLDKNYFSTKPLYTFITPSGPSITEEFYKKIWR

A0A6J1CVL8 uncharacterized protein LOC1110151855.3e-0443.4Show/hide
Query:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLI
        +D  SR++SL+A +  I G+D+ + S+NI HL F DDT+ FST ++  ++NL+
Subjt:  MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGTCTTAGTAGAATTCTATCTTTGGCGGCTGAAAGTGGATTCATTTGCGGTTATGACATGCCTCAAACATCCATCAACATTGATCATCTCCTTTTTGCTGACGA
TACTTTGCCTTTCTCCACCAACAATGAAGAGAAGATTGAAAATCTCATCATTTTGAGGCATCTGTGGCTGAGCCCTGAGGTATGGACCATTGAGCTCTGTTCTTGGACAT
TGAATTTCAGAAGGCATTTCAAAGAGGAAGAAATTACAGAATGCGCTGCATTCACTCATTTTATCCCCAATATTGAGCTTACTGGCAGTAGTGACTCATGGACTTGGAAG
CTTGACAAAAATTACTTCTCCACTAAACCTTTATACACATTCATTACGCCTAGTGGGCCATCAATTACAGAGGAGTTCTACAAGAAAATTTGGAGATGCCCCTGCCCTAA
ACGTATTCTTACTGTGGGAAGTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGTCTTAGTAGAATTCTATCTTTGGCGGCTGAAAGTGGATTCATTTGCGGTTATGACATGCCTCAAACATCCATCAACATTGATCATCTCCTTTTTGCTGACGA
TACTTTGCCTTTCTCCACCAACAATGAAGAGAAGATTGAAAATCTCATCATTTTGAGGCATCTGTGGCTGAGCCCTGAGGTATGGACCATTGAGCTCTGTTCTTGGACAT
TGAATTTCAGAAGGCATTTCAAAGAGGAAGAAATTACAGAATGCGCTGCATTCACTCATTTTATCCCCAATATTGAGCTTACTGGCAGTAGTGACTCATGGACTTGGAAG
CTTGACAAAAATTACTTCTCCACTAAACCTTTATACACATTCATTACGCCTAGTGGGCCATCAATTACAGAGGAGTTCTACAAGAAAATTTGGAGATGCCCCTGCCCTAA
ACGTATTCTTACTGTGGGAAGTCACTAA
Protein sequenceShow/hide protein sequence
MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAFTHFIPNIELTGSSDSWTWK
LDKNYFSTKPLYTFITPSGPSITEEFYKKIWRCPCPKRILTVGSH