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HG10012180 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012180
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionE3 ubiquitin-protein ligase MBR2-like
Genome locationChr01:18472883..18473134
RNA-Seq ExpressionHG10012180
SyntenyHG10012180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605180.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1146.99Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        M FA+ + +  +LRR DG DQ L++R  +  RLISRSP++ LPY+I  E    P+ +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

KAG6605222.1 E3 ubiquitin-protein ligase AMFR, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1249.4Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        MPFA+ + +  +LRR  G DQ L++R  +  RLISRSP A LPY+I  ET   P+ +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

XP_022947841.1 NEP1-interacting protein-like 1 [Cucurbita moschata]3.4e-1249.4Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        MPFA+ + +  +LRR  G DQ L++R  +  RLISRSP A LPY+I  ET   P+ +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

XP_023006825.1 NEP1-interacting protein-like 1 [Cucurbita maxima]2.9e-1148.19Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        MP A+ + +  +LRR  G DQ L+ R  +  RLISRSP A LPY+I  ET   P+ +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

XP_023539480.1 E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]4.9e-1146.99Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        M  A +A    NL R DG DQ L+IR  H  RL++ SPF+  P+ I  ET    + + + PLPLR+LEDP FC  YI  F+SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

TrEMBL top hitse value%identityAlignment
A0A0A0L2F8 Uncharacterized protein1.2e-0744.58Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        MP  S +    ++RR  G +QSL+IR     RL+S SP A LPYEI +E+   P+ E   PLPLR +ED   C  YI   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

A0A6J1G7L1 NEP1-interacting protein-like 11.6e-1249.4Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        MPFA+ + +  +LRR  G DQ L++R  +  RLISRSP A LPY+I  ET   P+ +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

A0A6J1G7R8 E3 ubiquitin-protein ligase MBR2-like2.4e-1146.99Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        M FA+ + +  +LRR DG DQ L++R  +  RLISRSP++ LPY+I  ET    + +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

A0A6J1L186 NEP1-interacting protein-like 11.4e-1148.19Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        MP A+ + +  +LRR  G DQ L+ R  +  RLISRSP A LPY+I  ET   P+ +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

A0A6J1L191 E3 ubiquitin-protein ligase At1g63170-like4.1e-1146.99Show/hide
Query:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS
        M FA+ + +  +LRR  G DQ L++R  +  RLIS+SP A LPY+I  ET   P+ +   PLPLR+LEDP FC+ Y+   +SS
Subjt:  MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTCGCATCTGTTGCGTACATCAGCCGGAATCTCCGACGCATGGACGGTGACGATCAATCTCTGAAAATCCGATTCCGGCATAGAAAACGTCTGATCTCCCGATC
ACCGTTCGCGCAACTTCCGTACGAGATCAAGAGAGAAACTTGGTTTTTTCCGTTGGGAGAAATCGAGTTGCCTCTCCCGCTGCGAAAACTGGAAGATCCGGAGTTCTGTT
ATGATTACATCTCTGGTTTTATGTCCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTCGCATCTGTTGCGTACATCAGCCGGAATCTCCGACGCATGGACGGTGACGATCAATCTCTGAAAATCCGATTCCGGCATAGAAAACGTCTGATCTCCCGATC
ACCGTTCGCGCAACTTCCGTACGAGATCAAGAGAGAAACTTGGTTTTTTCCGTTGGGAGAAATCGAGTTGCCTCTCCCGCTGCGAAAACTGGAAGATCCGGAGTTCTGTT
ATGATTACATCTCTGGTTTTATGTCCTCATAA
Protein sequenceShow/hide protein sequence
MPFASVAYISRNLRRMDGDDQSLKIRFRHRKRLISRSPFAQLPYEIKRETWFFPLGEIELPLPLRKLEDPEFCYDYISGFMSS