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HG10012181 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012181
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING finger protein 165-like protein
Genome locationChr01:18473414..18476271
RNA-Seq ExpressionHG10012181
SyntenyHG10012181
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052771.1 RING finger protein 165-like protein [Cucumis melo var. makuwa]3.3e-0753.33Show/hide
Query:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC
        +G CCVCYEEL  +GEE             +EV+RIGCG+VYHKSCI+ W  R   CPLC
Subjt:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC

XP_008466247.1 PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo]5.6e-0755.93Show/hide
Query:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR
        CCVCYE+L+ E EEE+E          EEVTRI CG+VYHK CIL W      CPLC R
Subjt:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR

XP_011652885.1 RING-H2 finger protein ATL66 [Cucumis sativus]4.3e-0754.24Show/hide
Query:  GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC
        G CCVCYE+L+ E EEE+           EE TRI CG+VYHKSCIL W      CPLC
Subjt:  GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC

XP_038876865.1 putative RING-H2 finger protein ATL53 [Benincasa hispida]4.3e-0748.39Show/hide
Query:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR
        MG CCVCYEEL+               +  +EV+RI CG++YHKSCILTW + +  CPLC R
Subjt:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR

XP_038905732.1 E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]2.5e-0751.61Show/hide
Query:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR
        +G CCVC EEL               +E  +EV+RIGCG+VYHKSCILTWA+    CPLC R
Subjt:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR

TrEMBL top hitse value%identityAlignment
A0A0A0LHI3 RING-type domain-containing protein2.1e-0754.24Show/hide
Query:  GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC
        G CCVCYE+L+ E EEE+           EE TRI CG+VYHKSCIL W      CPLC
Subjt:  GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC

A0A1S3CR16 E3 ubiquitin-protein ligase synoviolin B-like2.7e-0755.93Show/hide
Query:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR
        CCVCYE+L+ E EEE+E          EEVTRI CG+VYHK CIL W      CPLC R
Subjt:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR

A0A5A7T784 E3 ubiquitin-protein ligase synoviolin B-like2.7e-0755.93Show/hide
Query:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR
        CCVCYE+L+ E EEE+E          EEVTRI CG+VYHK CIL W      CPLC R
Subjt:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR

A0A5A7UAN0 RING finger protein 165-like protein1.3e-0649.18Show/hide
Query:  GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR
        G CC+C+EEL+          EE  E+  +EV R+ CG+VYHKSCIL W +R   CPLC R
Subjt:  GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR

A0A5D3BYE9 RING finger protein 165-like protein1.6e-0753.33Show/hide
Query:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC
        +G CCVCYEEL  +GEE             +EV+RIGCG+VYHKSCI+ W  R   CPLC
Subjt:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G45180.1 RING/U-box superfamily protein1.9e-0536.07Show/hide
Query:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSRFG
        CCVC                +EE +E EE+ R+ CG+ +H  CI  W K+K  CP+C   G
Subjt:  CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSRFG

AT1G60360.1 RING/U-box superfamily protein2.8e-0430.65Show/hide
Query:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR
        M  C VC EE    G                + T + C ++YHK CI+ W +    CP+C R
Subjt:  MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR

AT4G05350.1 RING/U-box superfamily protein1.9e-0555.17Show/hide
Query:  EVTRIGCGNVYHKSCILTWAKRKKCCPLC
        +VTR+ C +V+H  C+L W KRK  CPLC
Subjt:  EVTRIGCGNVYHKSCILTWAKRKKCCPLC

AT4G12140.1 RING/U-box superfamily protein5.6e-0551.85Show/hide
Query:  TRIGCGNVYHKSCILTWAKRKKCCPLC
        TR+ C +V+H SC++ W KRK  CP+C
Subjt:  TRIGCGNVYHKSCILTWAKRKKCCPLC

AT4G12190.1 RING/U-box superfamily protein2.5e-0551.72Show/hide
Query:  EVTRIGCGNVYHKSCILTWAKRKKCCPLC
        ++TR+ C +V+H  C+L W KRK  CPLC
Subjt:  EVTRIGCGNVYHKSCILTWAKRKKCCPLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCATTGCTGTGTTTGTTACGAAGAATTGGATACTGAAGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAACTTGAGGAGGTGACTAGAATCGG
GTGTGGTAATGTGTATCACAAATCGTGCATTCTTACTTGGGCTAAAAGGAAAAAATGTTGTCCTCTGTGCAGCAGATTCGGCACGAGGCATGATGGATCTGAGCGATGGG
GAGGTTCTGGTAGGTCGACGCGTGCAAATCTGGGTGGCACAGGCGAATCAGGACGAACTCAAATAGTTGGCGACGGGAGAAGAATCGACGACATAACTATGCACGGATCT
GGCGCCGATGAGACGACATCTGACAAAGCCGTGTGCGAAACTGAAGCAAAGGCTGGACAGATCGGCTTTATTTCAAATCATCCATATATATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCATTGCTGTGTTTGTTACGAAGAATTGGATACTGAAGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAACTTGAGGAGGTGACTAGAATCGG
GTGTGGTAATGTGTATCACAAATCGTGCATTCTTACTTGGGCTAAAAGGAAAAAATGTTGTCCTCTGTGCAGCAGATTCGGCACGAGGCATGATGGATCTGAGCGATGGG
GAGGTTCTGGTAGGTCGACGCGTGCAAATCTGGGTGGCACAGGCGAATCAGGACGAACTCAAATAGTTGGCGACGGGAGAAGAATCGACGACATAACTATGCACGGATCT
GGCGCCGATGAGACGACATCTGACAAAGCCGTGTGCGAAACTGAAGCAAAGGCTGGACAGATCGGCTTTATTTCAAATCATCCATATATATACTAG
Protein sequenceShow/hide protein sequence
MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSRFGTRHDGSERWGGSGRSTRANLGGTGESGRTQIVGDGRRIDDITMHGS
GADETTSDKAVCETEAKAGQIGFISNHPYIY