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HG10012183 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012183
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCarotenoid cleavage dioxygenase 1
Genome locationChr01:18485362..18488488
RNA-Seq ExpressionHG10012183
SyntenyHG10012183
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0042134 - rRNA primary transcript binding (molecular function)
GO:0051213 - dioxygenase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV65690.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]4.8e-1485.19Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLA
        ARTT VSNPIRSPSFRLSVSV AQQSAFAV VL+DLYAFHRST N LCPY T A
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLA
GEW12511.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]4.8e-1485.19Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLA
        ARTT VSNPIRSPSFRLSVSV AQQSAFAV VL+DLYAFHRST N LCPY T A
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLA
KAD0858377.1 hypothetical protein E3N88_43610 [Mikania micrantha]1.7e-1483.64Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
        ARTT +SNPIRSPSFRLSVSV AQQSAFAV VL DLYAFHRST N LCPY T AW
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
KAF3449761.1 hypothetical protein FNV43_RR05839 [Rhamnella rubrinervis]1.4e-1382.14Show/hide
Query:  KARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
        K  TT VSNPIRSPSFRLSVSV AQQSAFAV VL DLYAFHRST N LCPY T AW
Subjt:  KARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
PLY97343.1 hypothetical protein LSAT_4X145420 [Lactuca sativa]6.3e-1486.79Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTL
        ARTT VSNPIRSPSFRLSVSV AQQSAFAV VL DLYAFHRST N LCPYH L
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTL
TrEMBL top hitse value%identityAlignment
A0A2J6MCN3 Uncharacterized protein3.0e-1486.79Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTL
        ARTT VSNPIRSPSFRLSVSV AQQSAFAV VL DLYAFHRST N LCPYH L
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTL
A0A5J5S3A3 Uncharacterized protein (Fragment)1.5e-1388Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPY
        ARTT VSNPIRSPSFRLSVSV AQQSAFAV VL+DLYAFHRST N LCPY
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPY
A0A5N6LGN0 Uncharacterized protein8.0e-1583.64Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
        ARTT +SNPIRSPSFRLSVSV AQQSAFAV VL DLYAFHRST N LCPY T AW
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
A0A5N6N3J0 Uncharacterized protein1.2e-1381.82Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
        ARTT +SN IRSPSFRLSVSV AQQSAFAV VL DLYAFHRST N LCPY T AW
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW
A0A6L2P7F0 Carotenoid cleavage dioxygenase 13.4e-1383.02Show/hide
Query:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTL
        +RTT V NPIRSPSFRLSVSV AQQSAFAV VL DLYAFHRST N LCPYH L
Subjt:  ARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACAGGGCCTGGGTATTTTAAGCGTGTTGGGCCTGGGCTGCGGGATGATTCGGGAAATCAGAGAGGAATTGATAATATAACTCAAGGCTTGGAAGACATAAAAGG
CTTTGATGATGACGAGTGGATAAATGAATATTACAAAATTACAGTTCAAAGCAAAGCTAGGACTACTAGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAG
TGTCAGTGTTGGCCCAGCAGAGTGCTTTCGCCGTTGATGTTCTTTACGATCTCTACGCATTTCACCGCTCCACCATAAATTTTCTCTGCCCCTACCATACTCTAGCTTGG
TAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAACAGGGCCTGGGTATTTTAAGCGTGTTGGGCCTGGGCTGCGGGATGATTCGGGAAATCAGAGAGGAATTGATAATATAACTCAAGGCTTGGAAGACATAAAAGG
CTTTGATGATGACGAGTGGATAAATGAATATTACAAAATTACAGTTCAAAGCAAAGCTAGGACTACTAGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAG
TGTCAGTGTTGGCCCAGCAGAGTGCTTTCGCCGTTGATGTTCTTTACGATCTCTACGCATTTCACCGCTCCACCATAAATTTTCTCTGCCCCTACCATACTCTAGCTTGG
TAG
Protein sequenceShow/hide protein sequence
MPTGPGYFKRVGPGLRDDSGNQRGIDNITQGLEDIKGFDDDEWINEYYKITVQSKARTTRVSNPIRSPSFRLSVSVLAQQSAFAVDVLYDLYAFHRSTINFLCPYHTLAW