CuGenDBv2

Gene ID	HG10012203
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosome maturation factor
Genome location	Chr01:18782315..18782955
RNA-Seq Expression	HG10012203
Synteny	HG10012203
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7011375.1 hypothetical protein SDJN02_26280 [Cucurbita argyrosperma subsp. argyrosperma]

3.0e-73

89.94

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK D+LP  DQKRKKHSPSSSSI+ YDGQDD+K SKSFRFSFPSPSPPRQE LVHAIPILT+ICFLILYI SH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFKRPSEQLAEIKADGDELI+PK+GNILA+QSFRNLKEIEKSSSLKSR+PRKLADF
Subjt:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

XP_004136199.1 uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]

7.8e-74

93.71

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Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK DE PADDQKRKKHSPSSSSILNY GQDDDK+SKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFK PS+QL EIKADGDELI+PKKGNILAIQSFRNLKEIEKS SLKSR PRKLADF
Subjt:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

XP_008466004.1 PREDICTED: uncharacterized protein LOC103503567 isoform X1 [Cucumis melo]

3.5e-74

93.75

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK DE PADDQKRKKHSPSSSSILNY GQDDDK+SKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKA-DGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFKRPS+QLAEIKA DG ELI+PKKGNILAIQSFRNLKEIEKS SLKSR PRKLADF
Subjt:  QFHGFKRPSEQLAEIKA-DGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

XP_011652641.1 uncharacterized protein LOC101212292 isoform X1 [Cucumis sativus]

1.1e-75

94.34

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Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK DE PADDQKRKKHSPSSSSILNY GQDDDK+SKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFK PS+QLAEIKADGDELI+PKKGNILAIQSFRNLKEIEKS SLKSR PRKLADF
Subjt:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

XP_022963558.1 uncharacterized protein LOC111463852 isoform X1 [Cucurbita moschata]

3.9e-73

89.94

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK D+LP  DQKRKKHSPSSSSI+ YDGQDD+K SKSFRFSFPSPSPPRQE LVHAIPILT+ICFLILYI SH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFKRPSEQLAEIKADGDELI+PK+GNI+AIQSFRNLKEIEKSSSLKSR+PRKLADF
Subjt:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LE94 Uncharacterized protein

3.8e-74

93.71

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK DE PADDQKRKKHSPSSSSILNY GQDDDK+SKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFK PS+QL EIKADGDELI+PKKGNILAIQSFRNLKEIEKS SLKSR PRKLADF
Subjt:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

A0A1S3CQ78 uncharacterized protein LOC103503567 isoform X1

1.7e-74

93.75

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK DE PADDQKRKKHSPSSSSILNY GQDDDK+SKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKA-DGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFKRPS+QLAEIKA DG ELI+PKKGNILAIQSFRNLKEIEKS SLKSR PRKLADF
Subjt:  QFHGFKRPSEQLAEIKA-DGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

A0A5A7T6T2 Uncharacterized protein

1.2e-72

93.12

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Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK DE PADDQKRKKHSPSSSSILNY GQDDDK+SKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKA-DGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFKRPS+QL EIKA DG ELI+PKKGNILAIQSFRNLKEIEKS SLKSR PRKLADF
Subjt:  QFHGFKRPSEQLAEIKA-DGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

A0A6J1HI49 uncharacterized protein LOC111463852 isoform X1

1.9e-73

89.94

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK D+LP  DQKRKKHSPSSSSI+ YDGQDD+K SKSFRFSFPSPSPPRQE LVHAIPILT+ICFLILYI SH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFHGFKRPSEQLAEIKADGDELI+PK+GNI+AIQSFRNLKEIEKSSSLKSR+PRKLADF
Subjt:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

A0A6J1HRQ8 uncharacterized protein LOC111466893 isoform X1

5.5e-73

91.19

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Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAK D LPADDQKRKKHSPSSSSI+ YDGQDDDK SKSFRFSFPSPSPPRQE LVHAIPILTIICFLILYI SH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF
        QFH FKRPSEQLAEIKADGDELI+PK+GNILAIQSFR L+EIEKSSSLKSR+PRKLADF
Subjt:  QFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G35470.1 unknown protein

9.4e-25

47.02

Show/hide

Query:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSP-SSSSILNYDGQDDDKASKSFRFSFPSP---SPPRQEKLVHAIPILTIICFLILYIFSHSPSQ
        MQR SL S  SKLH +G G K D    DD K    SP SSSS ++YD  +          S  SP   +  +QEKLVH IPILT+ICF+ILY+ S++PSQ
Subjt:  MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSP-SSSSILNYDGQDDDKASKSFRFSFPSP---SPPRQEKLVHAIPILTIICFLILYIFSHSPSQ

Query:  SDLAQFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQ-SFRNLKEIE----KSSSLKSRAPRKLADF
        SDLAQF+GF RPS+ L     +GDE+    + + L+I+ S RNL+E E    KS   +  + RK ADF
Subjt:  SDLAQFHGFKRPSEQLAEIKADGDELIIPKKGNILAIQ-SFRNLKEIE----KSSSLKSRAPRKLADF

Sequences

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CDS sequence

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ATGCAAAGGCAATCTCTAGGCTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCAAAACCTGATGAACTTCCGGCCGACGATCAAAAGCGAAAGAAGCACTCTCC
ATCTTCTTCCTCAATTCTCAACTACGACGGACAAGACGACGATAAAGCCTCTAAATCTTTCCGATTCTCATTTCCGTCGCCTTCTCCTCCGCGGCAGGAGAAGTTAGTTC
ACGCCATACCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCTCAGTCAGATTTGGCTCAGTTTCACGGATTCAAGCGTCCTTCAGAA
CAATTAGCAGAAATCAAAGCCGATGGAGACGAACTTATTATACCGAAGAAAGGCAACATTCTAGCGATTCAAAGTTTCCGTAACCTAAAAGAGATCGAAAAATCATCTTC
TCTTAAATCTCGCGCTCCGAGGAAACTCGCCGATTTCTAA

mRNA sequence

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Protein sequence

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MQRQSLGSPVSKLHGHGAGAKPDELPADDQKRKKHSPSSSSILNYDGQDDDKASKSFRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSE
QLAEIKADGDELIIPKKGNILAIQSFRNLKEIEKSSSLKSRAPRKLADF

HG10012203 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome