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HG10012225 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012225
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionglycine-rich cell wall structural protein 1.8-like isoform X46
Genome locationChr01:19053856..19054266
RNA-Seq ExpressionHG10012225
SyntenyHG10012225
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022963750.1 glycine-rich cell wall structural protein 1.8-like isoform X46 [Cucurbita moschata]3.3e-0443.7Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG
        MA +KLSSLVFFL F IG  I +AAR L++  +G  Y + SG   S Y SVGE G   Y   YG      G +YG Y    Y G   G++++  SG+  G
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG

Query:  VSGYNIEKGRKGDHDEYGEQYGQNYGG-DGGKRGG
         SG   E     D + YG   G NYGG  GGK GG
Subjt:  VSGYNIEKGRKGDHDEYGEQYGQNYGG-DGGKRGG

XP_023554143.1 keratin, type I cytoskeletal 9-like [Cucurbita pepo subsp. pepo]1.5e-0440.76Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGA----------GGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRY
        MA++KLSSLVFFL F IG  I +AAR L++  +G  Y + SG   S Y SVGE G           G Y G+YG  YN  G +YG Y    + G   G Y
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGA----------GGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRY

Query:  DQMGSGSSHGVSGYNIEKGRKGDHDEYG----EQY---------GQNYGGDGGKRGG
           G G   G  G N     +G H+EYG    E+Y         G NYGG GG   G
Subjt:  DQMGSGSSHGVSGYNIEKGRKGDHDEYG----EQY---------GQNYGGDGGKRGG

XP_038887038.1 heterogeneous nuclear ribonucleoprotein A3-like [Benincasa hispida]1.8e-1048.33Show/hide
Query:  IGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSGRGRYDQMGSGSSHG-VSGYNIEKGRKGDHDEY
        +GI+I  AAR LT   +G  Y  PS  +      VGENG G Y G+    YNPKGY YG Y NDYY+G   Y Q  + S +G   GY      KG   +Y
Subjt:  IGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSGRGRYDQMGSGSSHG-VSGYNIEKGRKGDHDEY

Query:  GEQYGQNYGGDGGKRGGSPK
         EQYGQ YGG GG+RGGS K
Subjt:  GEQYGQNYGGDGGKRGGSPK

XP_038887039.1 shematrin-like protein 2 [Benincasa hispida]8.9e-2661.76Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSGRGRYDQMGSGSSHGVS
        MA YKLSSLVF LLF  GIEIS A RALT + QG +Y NPS  SN  Y+ VGENG G Y G    GY PKGY YG YKNDYYSGR +Y Q  +   +GVS
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSGRGRYDQMGSGSSHGVS

Query:  GYNIEKGRKGDHDEYGEQYGQNYGGDGGKRGGSPKE
        GY+  K  KG+ D+Y EQYGQ YG  GGKRGGS  E
Subjt:  GYNIEKGRKGDHDEYGEQYGQNYGGDGGKRGGSPKE

XP_038887042.1 pupal cuticle protein Edg-91-like [Benincasa hispida]7.8e-0640.94Show/hide
Query:  AARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSGRGRYDQMGSGSSHGVSGYNIEKGRKG-DHDEYGEQY---
        AAR+LT FG+G +Y NPS         V ENG       YG GYNPK YRY  Y NDYY GRG+ DQ+G  S +GV  Y      KG ++++Y   Y   
Subjt:  AARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSGRGRYDQMGSGSSHGVSGYNIEKGRKG-DHDEYGEQY---

Query:  ----------GQNYGGDGGKRGGSPKE
                  G  YG  G   G  PK+
Subjt:  ----------GQNYGGDGGKRGGSPKE

TrEMBL top hitse value%identityAlignment
A0A6J1HG23 glycine-rich cell wall structural protein 1.8-like isoform X434.6e-0441.26Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG----------RGRYDQ
        MA +KLSSLVFFL F IG  I +AAR L++  +G  Y + SG   S Y SVGE G   Y   YG      G +YG Y    Y G           G Y  
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG----------RGRYDQ

Query:  MGSGSSHGVSGYNIEKGRKGDHDEYG----EQY-GQNYGGDGG
           G   G  G N      G H+EYG    E Y G NYGG GG
Subjt:  MGSGSSHGVSGYNIEKGRKGDHDEYG----EQY-GQNYGGDGG

A0A6J1HGY2 glycine-rich cell wall structural protein 1.8-like isoform X472.1e-0443.08Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG
        MA +KLSSLVFFL F IG  I +AAR L++  +G  Y + SG   S Y SVGE G   Y   YG      G +YG Y    Y G   G++++  SG+  G
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG

Query:  VSGYNIEKGRKGDHDEYGEQYGQNYGGDGG
         SG   E     D + YG   G NYGG GG
Subjt:  VSGYNIEKGRKGDHDEYGEQYGQNYGGDGG

A0A6J1HIW2 glycine-rich cell wall structural protein 1.8-like isoform X461.6e-0443.7Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG
        MA +KLSSLVFFL F IG  I +AAR L++  +G  Y + SG   S Y SVGE G   Y   YG      G +YG Y    Y G   G++++  SG+  G
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG

Query:  VSGYNIEKGRKGDHDEYGEQYGQNYGG-DGGKRGG
         SG   E     D + YG   G NYGG  GGK GG
Subjt:  VSGYNIEKGRKGDHDEYGEQYGQNYGG-DGGKRGG

A0A6J1HL43 glycine-rich cell wall structural protein 1.8-like isoform X451.6e-0441.3Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG----------RGRYDQ
        MA +KLSSLVFFL F IG  I +AAR L++  +G  Y + SG   S Y SVGE G   Y   YG      G +YG Y    Y G           G Y  
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG----------RGRYDQ

Query:  MGSGSSHGVSGYNIEKGRKGDHDEYGEQYGQNYGGDGG
           G   G  G N      G H+EYG   G NYGG GG
Subjt:  MGSGSSHGVSGYNIEKGRKGDHDEYGEQYGQNYGGDGG

A0A6J1HL49 glycine-rich cell wall structural protein 1.8-like isoform X506.0e-0441.73Show/hide
Query:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG
        MA +KLSSLVFFL F IG  I +AAR L++  +G  Y + SG   S Y SVGE G   Y   YG      G +YG Y    Y G   G++++  SG+  G
Subjt:  MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSG--RGRYDQMGSGSSHG

Query:  VSGYNIEKGRKGDHDEY-GEQYGQNYGGDGGKRGGSPKE
         SG        G H+ Y GE YG   GG+ G  GG   E
Subjt:  VSGYNIEKGRKGDHDEY-GEQYGQNYGGDGGKRGGSPKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTTATAAACTTTCTTCTCTTGTATTCTTCCTTTTATTCAGTATTGGTATTGAGATTTCTACTGCAGCCAGAGCTCTGACAGCTTTTGGTCAAGGAGATCAATA
TGATAATCCAAGTGGCCAAAGTAATAGTATGTATGATTCTGTAGGAGAAAATGGTGCTGGAGGCTACAATGGTGAATATGGTAGTGGATATAATCCGAAAGGTTATAGAT
ATGGAAACTACAAGAATGATTATTACTCAGGTCGGGGAAGGTACGATCAGATGGGTTCTGGTTCTAGTCATGGTGTTTCTGGATACAACATTGAAAAAGGTCGTAAAGGA
GATCATGATGAATATGGTGAACAATATGGACAAAACTATGGTGGTGATGGAGGAAAACGTGGAGGATCACCCAAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTTATAAACTTTCTTCTCTTGTATTCTTCCTTTTATTCAGTATTGGTATTGAGATTTCTACTGCAGCCAGAGCTCTGACAGCTTTTGGTCAAGGAGATCAATA
TGATAATCCAAGTGGCCAAAGTAATAGTATGTATGATTCTGTAGGAGAAAATGGTGCTGGAGGCTACAATGGTGAATATGGTAGTGGATATAATCCGAAAGGTTATAGAT
ATGGAAACTACAAGAATGATTATTACTCAGGTCGGGGAAGGTACGATCAGATGGGTTCTGGTTCTAGTCATGGTGTTTCTGGATACAACATTGAAAAAGGTCGTAAAGGA
GATCATGATGAATATGGTGAACAATATGGACAAAACTATGGTGGTGATGGAGGAAAACGTGGAGGATCACCCAAAGAATAG
Protein sequenceShow/hide protein sequence
MAFYKLSSLVFFLLFSIGIEISTAARALTAFGQGDQYDNPSGQSNSMYDSVGENGAGGYNGEYGSGYNPKGYRYGNYKNDYYSGRGRYDQMGSGSSHGVSGYNIEKGRKG
DHDEYGEQYGQNYGGDGGKRGGSPKE