; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10012251 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012251
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionFerredoxin
Genome locationChr01:19410144..19412920
RNA-Seq ExpressionHG10012251
SyntenyHG10012251
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571846.1 Ferredoxin C 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.6e-6171.43Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSFRSVNLKP SFR+F+STNRN  F DILKCRRKTTS ELQAAVDVA +T+NG PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

XP_022952427.1 uncharacterized protein LOC111455118 [Cucurbita moschata]1.6e-6171.96Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +T+NG PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

XP_022972000.1 uncharacterized protein LOC111470650 [Cucurbita maxima]3.2e-6272.49Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +TDNG PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

XP_023511494.1 uncharacterized protein LOC111776305 isoform X1 [Cucurbita pepo subsp. pepo]1.0e-6071.43Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS+ELQAAV VA +TD+G PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

XP_038888790.1 ferredoxin C 2, chloroplastic [Benincasa hispida]1.0e-6374.07Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSF SVNLKPESFR+FLSTNRNR F DILKCRRKTTSTELQAAVDVAARTD+G PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

TrEMBL top hitse value%identityAlignment
A0A1S3CQF2 Ferredoxin2.8e-5969.84Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLP TSFR+VN+K ESFR F STNRNR F D LKCRRKTTSTELQAAVDVAAR DNG PSIP+HKVTVHDRERGVVHEFVVPEDQYILHTAEAQSI+
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFP+SDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

A0A5A7TAG8 Ferredoxin2.8e-5969.84Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLP TSFR+VN+K ESFR F STNRNR F D LKCRRKTTSTELQAAVDVAAR DNG PSIP+HKVTVHDRERGVVHEFVVPEDQYILHTAEAQSI+
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFP+SDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

A0A6J1ESD7 Ferredoxin1.5e-6071.43Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSFRSVNLKPES R FLSTNRNR F D+LKCRRKT STELQA VDVA RTD+G  SIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

A0A6J1GKE0 Ferredoxin7.7e-6271.96Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +T+NG PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

A0A6J1I4R5 Ferredoxin1.6e-6272.49Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +TDNG PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         I +  +R       +  +  +GYALLCVGFPTSDVEVETQDEDE               ERDDYALELAMADE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

SwissProt top hitse value%identityAlignment
P00248 Ferredoxin1.5e-0635.79Show/hide
Query:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE
        T+KVT+ +   G+     VP+DQYIL  AE   I LP++CR         +LI   +     +         GY L CV +PTSD  +ET  E+E
Subjt:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE

P00253 Ferredoxin1.8e-0734.74Show/hide
Query:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE
        T KVT+ +   G  HE  VP+D+YIL  AE +   LPF+CR         +L+   +     +         GY L CV +PTSDV ++T  E++
Subjt:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE

P0A3C7 Ferredoxin-18.1e-0835.79Show/hide
Query:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE
        T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR         +L+   +     +         GY L CV +PTSDV ++T  E++
Subjt:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE

P0A3C8 Ferredoxin-18.1e-0835.79Show/hide
Query:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE
        T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR         +L+   +     +         GY L CV +PTSDV ++T  E++
Subjt:  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE

Q9C7Y4 Ferredoxin C 2, chloroplastic2.3e-3448.15Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        M ++LPCT   S+  K     R   TN  R           T + E +  V+V+  +D G   +P+HKVTVHDR+RGVVHEF VPEDQYILH+AE+Q+IS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         + +  +R       +  +  QGYALLCVGFPTSD+EVETQDEDE               ERDDYALELAM DE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

Arabidopsis top hitse value%identityAlignment
AT1G10960.1 ferredoxin 15.6e-0431.08Show/hide
Query:  EDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDED
        ED Y+L  AE   + LP++CR         +++  ++     +        +GY L CV +PTSDV +ET  E+
Subjt:  EDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDED

AT1G32550.1 2Fe-2S ferredoxin-like superfamily protein1.6e-3548.15Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        M ++LPCT   S+  K     R   TN  R           T + E +  V+V+  +D G   +P+HKVTVHDR+RGVVHEF VPEDQYILH+AE+Q+IS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE
        LPFACRH         + +  +R       +  +  QGYALLCVGFPTSD+EVETQDEDE               ERDDYALELAM DE
Subjt:  LPFACRHELIVKNLFAIMN-TVR-------TGVVSVQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALELAMADE

AT1G32550.2 2Fe-2S ferredoxin-like superfamily protein6.3e-3244.39Show/hide
Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS
        M ++LPCT   S+  K     R   TN  R           T + E +  V+V+  +D G   +P+HKVTVHDR+RGVVHEF   EDQYILH+AE+Q+IS
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSIS

Query:  LPFACRH-------------ELIVKNLFAIMNTVRTGVVS-----------VQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALEL
        LPFACRH             EL       I   +++  +S           + GYALLCVGFPTSD+EVETQDEDE               ERDDYALEL
Subjt:  LPFACRH-------------ELIVKNLFAIMNTVRTGVVS-----------VQGYALLCVGFPTSDVEVETQDEDE---------------ERDDYALEL

Query:  AMADE
        AM DE
Subjt:  AMADE

AT2G27510.1 ferredoxin 38.6e-0532.14Show/hide
Query:  GVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE
        G   EF V +DQYIL  AE   + LP++CR         +++  N+     +        +GY L CV +P SD  + T  E E
Subjt:  GVVHEFVVPEDQYILHTAEAQSISLPFACR--------HELIVKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTTCTTCTTCCCTGCACTTCCTTCCGTTCCGTAAATCTGAAGCCGGAATCTTTCCGGAGATTTCTCTCGACAAATCGGAACCGTCTCTTTCCCGACATCTTGAA
ATGCCGCCGAAAAACGACCTCAACTGAGCTCCAGGCAGCTGTCGACGTCGCCGCTCGGACTGACAACGGTTATCCTTCAATTCCGACTCATAAGGTCACCGTTCACGATA
GGGAGAGAGGCGTTGTTCATGAGTTCGTTGTTCCTGAGGATCAGTACATATTGCACACTGCCGAAGCTCAGAGCATATCTCTTCCATTTGCTTGCAGGCACGAACTTATT
GTTAAGAACTTATTTGCTATTATGAACACGGTTAGAACTGGAGTAGTGTCAGTGCAGGGCTATGCACTTCTTTGCGTAGGTTTTCCAACCTCAGATGTTGAAGTAGAAAC
TCAAGATGAGGATGAGGAGAGAGATGACTATGCTCTAGAGTTGGCCATGGCTGATGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTTCTTCTTCCCTGCACTTCCTTCCGTTCCGTAAATCTGAAGCCGGAATCTTTCCGGAGATTTCTCTCGACAAATCGGAACCGTCTCTTTCCCGACATCTTGAA
ATGCCGCCGAAAAACGACCTCAACTGAGCTCCAGGCAGCTGTCGACGTCGCCGCTCGGACTGACAACGGTTATCCTTCAATTCCGACTCATAAGGTCACCGTTCACGATA
GGGAGAGAGGCGTTGTTCATGAGTTCGTTGTTCCTGAGGATCAGTACATATTGCACACTGCCGAAGCTCAGAGCATATCTCTTCCATTTGCTTGCAGGCACGAACTTATT
GTTAAGAACTTATTTGCTATTATGAACACGGTTAGAACTGGAGTAGTGTCAGTGCAGGGCTATGCACTTCTTTGCGTAGGTTTTCCAACCTCAGATGTTGAAGTAGAAAC
TCAAGATGAGGATGAGGAGAGAGATGACTATGCTCTAGAGTTGGCCATGGCTGATGAGTAA
Protein sequenceShow/hide protein sequence
MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHELI
VKNLFAIMNTVRTGVVSVQGYALLCVGFPTSDVEVETQDEDEERDDYALELAMADE