; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10012252 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012252
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein LOL1-like
Genome locationChr01:19419202..19420782
RNA-Seq ExpressionHG10012252
SyntenyHG10012252
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148490.1 protein LOL1 [Cucumis sativus]4.8e-6289.78Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PYTQP+N         GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

XP_022930968.1 protein LOL1 [Cucurbita moschata]1.4e-6189.78Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PYT PAN         GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

XP_022952054.1 protein LOL1-like [Cucurbita moschata]6.3e-6289.05Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PY+QPAN         GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTS+G  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

XP_038887481.1 protein LOL1 isoform X1 [Benincasa hispida]4.0e-6984.34Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPPTPYTQPAN         GCRNLL+YPVGATSVCCAVCNAVT VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLTLLMSFVVDVNERDRSKSLIAKAIVKHGCP
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG         VDVNE DRSKSLIAK IV    P
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLTLLMSFVVDVNERDRSKSLIAKAIVKHGCP

XP_038887483.1 protein LOL1 isoform X2 [Benincasa hispida]1.6e-6290.51Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPPTPYTQPAN         GCRNLL+YPVGATSVCCAVCNAVT VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

TrEMBL top hitse value%identityAlignment
A0A0A0LEE4 Uncharacterized protein2.3e-6289.78Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PYTQP+N         GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

A0A1S3CQ35 protein LOL12.0e-6189.05Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PYTQP+N         GCRNLL+YPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

A0A6J1ET02 protein LOL16.7e-6289.78Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PYT PAN         GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

A0A6J1GKN9 protein LOL1-like3.0e-6289.05Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PY+QPAN         GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTS+G  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

A0A6J1K0Y9 protein LOL11.5e-6189.05Show/hide
Query:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
        MPPVPLAPYPTPP PYT PAN         GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ
Subjt:  MPPVPLAPYPTPPTPYTQPAN---------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ

Query:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT
        VAHVSCGNCRMLLMYQYGARSVKC+VCNFVTSVG  T
Subjt:  VAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGYLT

SwissProt top hitse value%identityAlignment
P94077 Protein LSD13.5e-3158.26Show/hide
Query:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYG
        +GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YG
Subjt:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYG

Query:  ARSVKCAVCNFVTSV
        A SVKCAVC FVT+V
Subjt:  ARSVKCAVCNFVTSV

Q0J7V9 Protein LSD16.7e-5984.73Show/hide
Query:  PVPLAPYPTPPTPYTQP--------ANGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAH
        PVPLAPYPTPP P+T P         +GCRNLL+YP GATSVCCAVC+ VTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAH
Subjt:  PVPLAPYPTPPTPYTQP--------ANGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAH

Query:  VSCGNCRMLLMYQYGARSVKCAVCNFVTSVG
        V+CGNCRMLLMYQYGARSVKCAVCNFVTSVG
Subjt:  VSCGNCRMLLMYQYGARSVKCAVCNFVTSVG

Q2QMB3 Protein LOL23.0e-3560.91Show/hide
Query:  NGCRNLLVYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCN
        +GCRN+L+YP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R ATSV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CN
Subjt:  NGCRNLLVYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCN

Query:  FVTSVGYLTL
        F+T+ G  T+
Subjt:  FVTSVGYLTL

Q6ASS2 Protein LOL38.8e-3561.26Show/hide
Query:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVC
        +GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C
Subjt:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVC

Query:  NFVTSVGYLTL
        +++T+ G  T+
Subjt:  NFVTSVGYLTL

Q93ZB1 Protein LOL16.7e-5982.98Show/hide
Query:  PVPLAPYPTPPTP------YTQPAN------------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
        PVPLAPYPTPP P       T PAN            GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
Subjt:  PVPLAPYPTPPTP------YTQPAN------------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN

Query:  LALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG
        LALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG
Subjt:  LALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 17.1e-5696.19Show/hide
Query:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNF
        +GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNF
Subjt:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNF

Query:  VTSVG
        VTSVG
Subjt:  VTSVG

AT1G32540.2 lsd one like 14.8e-6082.98Show/hide
Query:  PVPLAPYPTPPTP------YTQPAN------------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
        PVPLAPYPTPP P       T PAN            GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
Subjt:  PVPLAPYPTPPTP------YTQPAN------------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN

Query:  LALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG
        LALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG
Subjt:  LALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG

AT1G32540.3 lsd one like 14.8e-6082.98Show/hide
Query:  PVPLAPYPTPPTP------YTQPAN------------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
        PVPLAPYPTPP P       T PAN            GCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
Subjt:  PVPLAPYPTPPTP------YTQPAN------------GCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN

Query:  LALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG
        LALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG
Subjt:  LALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG

AT4G20380.1 LSD1 zinc finger family protein2.5e-3258.26Show/hide
Query:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYG
        +GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YG
Subjt:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYG

Query:  ARSVKCAVCNFVTSV
        A SVKCAVC FVT+V
Subjt:  ARSVKCAVCNFVTSV

AT4G20380.2 LSD1 zinc finger family protein2.5e-3258.26Show/hide
Query:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYG
        +GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YG
Subjt:  NGCRNLLVYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYG

Query:  ARSVKCAVCNFVTSV
        A SVKCAVC FVT+V
Subjt:  ARSVKCAVCNFVTSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCAGTTCCTCTTGCACCATATCCAACCCCTCCAACACCTTATACACAACCTGCTAATGGATGCAGAAACCTCTTAGTTTATCCAGTTGGGGCAACCTCTGTTTG
CTGTGCAGTTTGTAATGCAGTTACTGCTGTACCGCCTCCCGGCACAGAAATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGA
GTGTACAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCA
AGGTCGGTGAAATGTGCAGTATGCAATTTTGTGACATCAGTTGGGTATCTCACACTATTAATGTCTTTTGTTGTAGATGTCAACGAGCGTGATCGATCAAAAAGCTTAAT
AGCTAAAGCTATCGTAAAACATGGTTGTCCTAAATTCGACAACTGCGGCTTCGTCCAATATTTGCAACGCCTTCCAGGGTGTTTGTCCGACTCGACAAACGGAGGTTCCT
CTTCATATTCACTTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCACCAGTTCCTCTTGCACCATATCCAACCCCTCCAACACCTTATACACAACCTGCTAATGGATGCAGAAACCTCTTAGTTTATCCAGTTGGGGCAACCTCTGTTTG
CTGTGCAGTTTGTAATGCAGTTACTGCTGTACCGCCTCCCGGCACAGAAATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGA
GTGTACAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCA
AGGTCGGTGAAATGTGCAGTATGCAATTTTGTGACATCAGTTGGGTATCTCACACTATTAATGTCTTTTGTTGTAGATGTCAACGAGCGTGATCGATCAAAAAGCTTAAT
AGCTAAAGCTATCGTAAAACATGGTTGTCCTAAATTCGACAACTGCGGCTTCGTCCAATATTTGCAACGCCTTCCAGGGTGTTTGTCCGACTCGACAAACGGAGGTTCCT
CTTCATATTCACTTGTATAG
Protein sequenceShow/hide protein sequence
MPPVPLAPYPTPPTPYTQPANGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
RSVKCAVCNFVTSVGYLTLLMSFVVDVNERDRSKSLIAKAIVKHGCPKFDNCGFVQYLQRLPGCLSDSTNGGSSSYSLV