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HG10012294 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012294
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProlyl-tRNA synthetase
Genome locationChr01:19818166..19819007
RNA-Seq ExpressionHG10012294
SyntenyHG10012294
Gene Ontology termsGO:0006433 - prolyl-tRNA aminoacylation (biological process)
GO:0009553 - embryo sac development (biological process)
GO:0010109 - regulation of photosynthesis (biological process)
GO:0048316 - seed development (biological process)
GO:0048481 - plant ovule development (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex (cellular component)
GO:0004827 - proline-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR004499 - Proline-tRNA ligase, class IIa, archaeal-type
IPR016061 - Proline-tRNA ligase, class II, C-terminal
IPR017449 - Prolyl-tRNA synthetase, class II


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039093.1 proline--tRNA ligase [Cucumis melo var. makuwa]2.5e-3597.37Show/hide
Query:  FVNIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        F NIVDVSSYNELKEAISEGKWARGPWSASD+DELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
Subjt:  FVNIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

XP_004149956.3 proline--tRNA ligase, chloroplastic/mitochondrial [Cucumis sativus]7.1e-3598.65Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDVSSYNELKEAISEGKWARGPWSASD+DELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

XP_008456101.1 PREDICTED: proline--tRNA ligase, chloroplastic/mitochondrial, partial [Cucumis melo]7.1e-3598.65Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDVSSYNELKEAISEGKWARGPWSASD+DELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

XP_023541480.1 proline--tRNA ligase, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]1.3e-3394.59Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        N+VDVSSYNELKEAIS+GKWARGPWSASDKDEL+VKEETGATIRCFPFEQPQGPKTCLMTGN AEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

XP_038878181.1 proline--tRNA ligase, chloroplastic/mitochondrial [Benincasa hispida]2.7e-3497.3Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDVSSY+ELKEAISEGKWARGPWSASD+DELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

TrEMBL top hitse value%identityAlignment
A0A1S3C2J3 Prolyl-tRNA synthetase3.5e-3598.65Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDVSSYNELKEAISEGKWARGPWSASD+DELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

A0A5A7T7Z7 Proline--tRNA ligase1.2e-3597.37Show/hide
Query:  FVNIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        F NIVDVSSYNELKEAISEGKWARGPWSASD+DELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
Subjt:  FVNIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

A0A5J5ATM1 Prolyl-tRNA synthetase2.1e-3291.89Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDVSSY ELKEAIS+GKWARGPWSASD++EL+VKEETGATIRCFPFEQPQG KTCLMTGNPAEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

A0A6J1C8A3 Prolyl-tRNA synthetase5.5e-3394.59Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDVSSYNELKEAIS+GKWARGPWSASDKDELRVKEETGATIRCFPFEQPQG KTCLMTGN AE+VAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

A0A6J1G067 Prolyl-tRNA synthetase6.5e-3494.59Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        N+VDVSSYNELKEAIS+GKWARGPWSASDKDEL+VKEETGATIRCFPFEQPQGPKTCLMTGN AEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

SwissProt top hitse value%identityAlignment
A5UU62 Proline--tRNA ligase3.0e-1245.07Show/hide
Query:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        DV++Y+ELK+ +  G +AR  W+ + +DE R++EET ATIRC P +QPQ    C+ TG    +  IFA++Y
Subjt:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

A9W9Q2 Proline--tRNA ligase8.0e-1349.3Show/hide
Query:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        DV+SY+ELKE I  G +AR  W+    DE R++EET ATIRC P EQP     C+ TG   +   IFA++Y
Subjt:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

B8G3V5 Proline--tRNA ligase1.0e-1249.3Show/hide
Query:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        DV++Y+ELKE I  G +AR  W+ S  DE R++EET ATIRC P EQP     C+ TG   +   IFA++Y
Subjt:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

B9LC55 Proline--tRNA ligase8.0e-1349.3Show/hide
Query:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        DV+SY+ELKE I  G +AR  W+    DE R++EET ATIRC P EQP     C+ TG   +   IFA++Y
Subjt:  DVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

Q9FYR6 Proline--tRNA ligase, chloroplastic/mitochondrial9.1e-3389.19Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDV+SY ELK+AIS GKWARGPWSASD DE RVKEETGATIRCFPFEQ QG KTCLMTGNPAEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY

Arabidopsis top hitse value%identityAlignment
AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein6.4e-3489.19Show/hide
Query:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY
        NIVDV+SY ELK+AIS GKWARGPWSASD DE RVKEETGATIRCFPFEQ QG KTCLMTGNPAEEVAIFAKSY
Subjt:  NIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTTCAGTTTGATGTTCCTTGGATTGTTGTATTATTTGGTCTCTCCATTTGTTAACATTGTGGATGTGAGTTCATATAATGAACTTAAAGAGGCAATCTCCGAGGG
AAAATGGGCTAGGGGTCCTTGGTCAGCTAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACAGGAGCAACAATTAGGTGCTTTCCTTTTGAACAGCCACAAGGGCCTA
AAACATGTCTGATGACCGGGAACCCTGCTGAGGAAGTTGCCATTTTTGCAAAGTCTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCTTCAGTTTGATGTTCCTTGGATTGTTGTATTATTTGGTCTCTCCATTTGTTAACATTGTGGATGTGAGTTCATATAATGAACTTAAAGAGGCAATCTCCGAGGG
AAAATGGGCTAGGGGTCCTTGGTCAGCTAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACAGGAGCAACAATTAGGTGCTTTCCTTTTGAACAGCCACAAGGGCCTA
AAACATGTCTGATGACCGGGAACCCTGCTGAGGAAGTTGCCATTTTTGCAAAGTCTTACTAA
Protein sequenceShow/hide protein sequence
MCFSLMFLGLLYYLVSPFVNIVDVSSYNELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY