; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10012378 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012378
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionembryo-specific protein ATS3B-like
Genome locationChr01:20609844..20611050
RNA-Seq ExpressionHG10012378
SyntenyHG10012378
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR010417 - Embryo-specific ATS3
IPR036392 - PLAT/LH2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650438.1 hypothetical protein Csa_009650 [Cucumis sativus]6.7e-5491.74Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIP D
Subjt:  NYNTAIPND

XP_004148122.1 embryo-specific protein ATS3B [Cucumis sativus]6.7e-5491.74Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIP D
Subjt:  NYNTAIPND

XP_022140983.1 embryo-specific protein ATS3B-like isoform X2 [Momordica charantia]5.6e-5389.91Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++Q GSCSYSVVISTSCSSPSYTRD ISLSFGDAYGNQ+YVPR+DDPSRR FERCS+DTF INGPCAYQICYVYLYRSGPDAWIPTTVKISGD+SRP+TF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIPND
Subjt:  NYNTAIPND

XP_022984446.1 embryo-specific protein ATS3B-like [Cucurbita maxima]5.6e-5388.99Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF ++GPCAYQ+CYVYLYRSGPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIPND
Subjt:  NYNTAIPND

XP_038877434.1 embryo-specific protein ATS3B-like [Benincasa hispida]1.0e-5493.58Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP++TRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIPND
Subjt:  NYNTAIPND

TrEMBL top hitse value%identityAlignment
A0A0A0L5P4 Uncharacterized protein3.2e-5491.74Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIP D
Subjt:  NYNTAIPND

A0A6J1CHB0 embryo-specific protein ATS3B-like isoform X32.7e-5389.91Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++Q GSCSYSVVISTSCSSPSYTRD ISLSFGDAYGNQ+YVPR+DDPSRR FERCS+DTF INGPCAYQICYVYLYRSGPDAWIPTTVKISGD+SRP+TF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIPND
Subjt:  NYNTAIPND

A0A6J1CIK5 embryo-specific protein ATS3B-like isoform X12.7e-5389.91Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++Q GSCSYSVVISTSCSSPSYTRD ISLSFGDAYGNQ+YVPR+DDPSRR FERCS+DTF INGPCAYQICYVYLYRSGPDAWIPTTVKISGD+SRP+TF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIPND
Subjt:  NYNTAIPND

A0A6J1CJ97 embryo-specific protein ATS3B-like isoform X22.7e-5389.91Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++Q GSCSYSVVISTSCSSPSYTRD ISLSFGDAYGNQ+YVPR+DDPSRR FERCS+DTF INGPCAYQICYVYLYRSGPDAWIPTTVKISGD+SRP+TF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIPND
Subjt:  NYNTAIPND

A0A6J1J591 embryo-specific protein ATS3B-like2.7e-5388.99Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF ++GPCAYQ+CYVYLYRSGPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPND
        NYNTAIPND
Subjt:  NYNTAIPND

SwissProt top hitse value%identityAlignment
Q681K2 Embryo-specific protein ATS3A1.9e-3562.04Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        L+   +CSY+V+I TSCSS SYTRD+IS+SFGD YGN+VYV RLDDPS R FE+CSSDT+ I+GPC   +CY+YL R G D W P  VKI G   R VTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPN
         YN  +PN
Subjt:  NYNTAIPN

Q6NPM5 Embryo-specific protein ATS3B8.0e-4269.72Show/hide
Query:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV
        ++++LG +C+Y+V+ISTSCSS  YTRDQIS++FGD YGNQ+Y PRLDDPS + FE+CSSDTF INGPC YQICYVYLYRSGPD WIP TVKI    S+ V
Subjt:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV

Query:  TFNYNTAIP
        TF YNT +P
Subjt:  TFNYNTAIP

Q9LYP6 Embryo-specific protein ATS32.7e-2144.44Show/hide
Query:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT
        Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF + G C    IC +Y+ R+GPD W+P +++I  + S+ V 
Subjt:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT

Query:  FNYNTAIP
        F+++ ++P
Subjt:  FNYNTAIP

Arabidopsis top hitse value%identityAlignment
AT2G41475.1 Embryo-specific protein 3, (ATS3)1.3e-3662.04Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        L+   +CSY+V+I TSCSS SYTRD+IS+SFGD YGN+VYV RLDDPS R FE+CSSDT+ I+GPC   +CY+YL R G D W P  VKI G   R VTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPN
         YN  +PN
Subjt:  NYNTAIPN

AT5G07190.1 seed gene 31.9e-2244.44Show/hide
Query:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT
        Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF + G C    IC +Y+ R+GPD W+P +++I  + S+ V 
Subjt:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT

Query:  FNYNTAIP
        F+++ ++P
Subjt:  FNYNTAIP

AT5G07190.2 seed gene 31.9e-2244.44Show/hide
Query:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT
        Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF + G C    IC +Y+ R+GPD W+P +++I  + S+ V 
Subjt:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT

Query:  FNYNTAIP
        F+++ ++P
Subjt:  FNYNTAIP

AT5G62200.1 Embryo-specific protein 3, (ATS3)5.6e-4369.72Show/hide
Query:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV
        ++++LG +C+Y+V+ISTSCSS  YTRDQIS++FGD YGNQ+Y PRLDDPS + FE+CSSDTF INGPC YQICYVYLYRSGPD WIP TVKI    S+ V
Subjt:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV

Query:  TFNYNTAIP
        TF YNT +P
Subjt:  TFNYNTAIP

AT5G62210.1 Embryo-specific protein 3, (ATS3)1.3e-2650Show/hide
Query:  SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDP--SRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYN
        SC Y+V+++TSC SP ++RDQ++++ GDA  NQV  PRLD P      FE+CSSDTF + G C   IC VY+YRSG D WIP TV+I  + S+ V F++N
Subjt:  SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDP--SRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYN

Query:  TAIPND
          +P +
Subjt:  TAIPND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACAAGCTGTTCGTCGCCTTCATACACAAGGGATCAGATCAGTCTTTCATTCGGTGATGCTTATGG
AAACCAGGTTTATGTACCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTTCTGATACATTTGGCATAAATGGACCTTGTGCTTACCAAATATGTTATG
TCTATCTTTATCGCTCTGGACCGGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGAT
GATGCTGTTCATGTTCTATCCTTGATAAGAATACATTTTGATATTAAAGGGCACGGATATCTAACTATAAAGCAGCATCGAGATTGTACTTTTGTAGATTTAATACAACA
GGCAGAGGGAGTTCTTGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACAAGCTGTTCGTCGCCTTCATACACAAGGGATCAGATCAGTCTTTCATTCGGTGATGCTTATGG
AAACCAGGTTTATGTACCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTTCTGATACATTTGGCATAAATGGACCTTGTGCTTACCAAATATGTTATG
TCTATCTTTATCGCTCTGGACCGGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGAT
GATGCTGTTCATGTTCTATCCTTGATAAGAATACATTTTGATATTAAAGGGCACGGATATCTAACTATAAAGCAGCATCGAGATTGTACTTTTGTAGATTTAATACAACA
GGCAGAGGGAGTTCTTGGTGATTGA
Protein sequenceShow/hide protein sequence
MLKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPND
DAVHVLSLIRIHFDIKGHGYLTIKQHRDCTFVDLIQQAEGVLGD