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HG10012472 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012472
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTPR_REGION domain-containing protein
Genome locationChr01:21512493..21514104
RNA-Seq ExpressionHG10012472
SyntenyHG10012472
Gene Ontology termsGO:0000244 - spliceosomal tri-snRNP complex assembly (biological process)
GO:0080188 - RNA-directed DNA methylation (biological process)
GO:2000630 - positive regulation of miRNA metabolic process (biological process)
GO:2000636 - positive regulation of primary miRNA processing (biological process)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR007122 - Villin/Gelsolin
IPR007123 - Gelsolin-like domain
IPR027108 - Pre-mRNA-processing factor 6/Prp1/STA1
IPR029006 - ADF-H/Gelsolin-like domain superfamily
IPR036180 - Gelsolin-like domain superfamily
IPR045075 - Pre-mRNA-splicing factor Syf1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8498303.1 hypothetical protein CXB51_007067 [Gossypium anomalum]1.9e-2358.59Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E    +Q D++   +      GE++  I ++V+
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
XP_002517947.1 protein STABILIZED1 [Ricinus communis]1.9e-2358.65Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDP
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E    +Q D+L   I      GE +  I ++V+ 
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDP

Query:  KEKQ
          +Q
Subjt:  KEKQ
XP_022947634.1 protein STABILIZED1 [Cucurbita moschata]1.9e-2360.61Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ   +    +Q D+L   I      GE +  I ++V+
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
XP_023532967.1 protein STABILIZED1 [Cucurbita pepo subsp. pepo]1.9e-2360.61Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ   +    +Q D+L   I      GE +  I ++V+
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
XP_038907061.1 protein STABILIZED1 [Benincasa hispida]1.9e-2362Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQ-VEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP VG FW LYYKFELQ  V+E    +Q D+L   I      GE +  I ++V+
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQ-VEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
TrEMBL top hitse value%identityAlignment
A0A067JJS0 Uncharacterized protein2.0e-2357.69Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDP
        QRK+KS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP  G FW LYYKFELQ   E    +Q D+L   +      GE +  I ++VD 
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDP

Query:  KEKQ
          +Q
Subjt:  KEKQ
A0A5B7BJW0 Putative pre-mRNA splicing factor (Fragment)1.2e-2360Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQ-VEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ AR+WL R VTLAP +G FW LYYKFELQ  +EE    +Q D+L   I+     GE +  I ++V+
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQ-VEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
A0A6J1G7D8 protein STABILIZED19.2e-2460.61Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ   +    +Q D+L   I      GE +  I ++V+
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
A0A6J1I4P8 protein STABILIZED19.2e-2460.61Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ   +    +Q D+L   I      GE +  I ++V+
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVD
B9RW28 Pre-mRNA splicing factor, putative9.2e-2458.65Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDP
        QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E    +Q D+L   I      GE +  I ++V+ 
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDP

Query:  KEKQ
          +Q
Subjt:  KEKQ
SwissProt top hitse value%identityAlignment
A1A5S1 Pre-mRNA-processing factor 64.7e-1756.72Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
O94906 Pre-mRNA-processing factor 68.0e-1755.22Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        QR+TKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
Q2KJJ0 Pre-mRNA-processing factor 64.7e-1756.72Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
Q91YR7 Pre-mRNA-processing factor 64.7e-1756.72Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
Q9ZT71 Protein STABILIZED15.0e-1963.49Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        +RKTKSIDA++KCD DPH+  AVAKLFW  +KV  AR W +R VT+ P +G FW L+YKFELQ
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
Arabidopsis top hitse value%identityAlignment
AT2G41740.1 villin 22.1e-1273.17Show/hide
Query:  QVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQ
        QVEEIYN +QDDLLTE+I  LDT  EVF+W+GQ V+PKEKQ
Subjt:  QVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQ
AT3G57410.1 villin 31.2e-1272.09Show/hide
Query:  QVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA
        QVEEI+N  QDDLLTEE+ +LDT  EVF+W+GQ VDPKEKQ A
Subjt:  QVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA
AT4G03430.1 pre-mRNA splicing factor-related3.6e-2063.49Show/hide
Query:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        +RKTKSIDA++KCD DPH+  AVAKLFW  +KV  AR W +R VT+ P +G FW L+YKFELQ
Subjt:  QRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
AT4G30160.1 villin 42.2e-0955.81Show/hide
Query:  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEK
        E+ +V EIYN +QDDL+TE+I I+D   E+F+W+GQ V PK K
Subjt:  ELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEK
AT5G57320.1 villin, putative4.4e-1055.1Show/hide
Query:  YKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA
        Y  E  +  EI+N +QDDL+TE+I ILD   EVF+W+GQ VDPK+K  A
Subjt:  YKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCACAACGTAAAACCAAGAGCATTGATGCACTTAGAAAATGTGATCATGATCCTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTAACATAGC
TAGAACTTGGCTGAAAAGGCCAGTAACACTTGCTCCAGGTGTTGGTGGTTTTTGGGTTTTATACTACAAATTTGAACTTCAGCAGGTAGAGGAAATTTATAATCTCTCTC
AAGATGATCTGTTGACAGAGGAGATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGGATTGGTCAATCTGTTGACCCCAAAGAAAAGCAAAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
GCACAACGTAAAACCAAGAGCATTGATGCACTTAGAAAATGTGATCATGATCCTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTAACATAGC
TAGAACTTGGCTGAAAAGGCCAGTAACACTTGCTCCAGGTGTTGGTGGTTTTTGGGTTTTATACTACAAATTTGAACTTCAGCAGGTAGAGGAAATTTATAATCTCTCTC
AAGATGATCTGTTGACAGAGGAGATCTTGATACTTGACACTCAAGGTGAAGTGTTTATTTGGATTGGTCAATCTGTTGACCCCAAAGAAAAGCAAAATGCTTGA
Protein sequenceShow/hide protein sequence
AQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVFIWIGQSVDPKEKQNA