; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10012475 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012475
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationChr01:21538001..21540496
RNA-Seq ExpressionHG10012475
SyntenyHG10012475
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]7.9e-6796.3Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSS+ AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]4.6e-6798.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

XP_004147903.1 signal recognition particle 19 kDa protein [Cucumis sativus]7.9e-6796.3Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSS+ AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]1.6e-6798.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]7.9e-6798.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

TrEMBL top hitse value%identityAlignment
A0A0A0L5F9 Uncharacterized protein2.2e-6798.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

A0A1S3AYC2 signal recognition particle 19 kDa protein7.7e-6898.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

A0A6J1CAM2 signal recognition particle 19 kDa protein2.1e-6596.32Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQ+MLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSK-GKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSK GKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSK-GKGGRKKK

A0A6J1GUF8 signal recognition particle 19 kDa protein1.2e-6596.3Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGR KKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

A0A6J1IY39 signal recognition particle 19 kDa protein9.4e-6697.04Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGR KKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein8.6e-2450Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        +   RT+K   A  S   G    KG  KKK
Subjt:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK

P49964 Signal recognition particle 19 kDa protein1.5e-4973.64Show/hide
Query:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPR
        +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPRDF Q GRVRVQLKK+DG+  NPAI ++KQLM++IAELVP+
Subjt:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPR

Query:  HPGRTKKQEPASSSTAAGPSKGKGGRKKK
        H GRTKKQEPA+SST AG SKGKGG+KKK
Subjt:  HPGRTKKQEPASSSTAAGPSKGKGGRKKK

Q5RBR1 Signal recognition particle 19 kDa protein8.6e-2450Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        +   RT+K   A  S   G    KG  KKK
Subjt:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK

Q943Z6 Signal recognition particle 19 kDa protein4.1e-5070.34Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EIDKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK
        AELVPRHP R KKQE          A++ST+   SK GKGG+KK+
Subjt:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK

Q9D7A6 Signal recognition particle 19 kDa protein1.5e-2349.62Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRVQLK+EDG+L      SRK +ML +AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASS--STAAGPSKGKGGRKK
        +   RT+K   A        G  KGKG +KK
Subjt:  RHPGRTKKQEPASS--STAAGPSKGKGGRKK

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative2.9e-5170.34Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EIDKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK
        AELVPRHP R KKQE          A++ST+   SK GKGG+KK+
Subjt:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATG
TGAGAATCCTACGTGCGCTGAGATTGGGGATTGCTGCAGTCATCTGAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAG
TGCGGGTTCAACTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCCATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGA
ACAAAGAAGCAGGAGCCTGCATCCTCATCAACAGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATG
TGAGAATCCTACGTGCGCTGAGATTGGGGATTGCTGCAGTCATCTGAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAG
TGCGGGTTCAACTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCCATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGA
ACAAAGAAGCAGGAGCCTGCATCCTCATCAACAGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG
Protein sequenceShow/hide protein sequence
MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGR
TKKQEPASSSTAAGPSKGKGGRKKK