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HG10012480 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012480
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLYR motif-containing 5A
Genome locationChr01:21568756..21570335
RNA-Seq ExpressionHG10012480
SyntenyHG10012480
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7146428.1 hypothetical protein RHSIM_Rhsim04G0245400 [Rhododendron simsii]1.3e-3364.44Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAI--QFPPQNFLIMH-------------VLSL---QLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETD
        MPSLQTALPPELANNVIRV +   ++ I   + P++    H             VLS+   +LYRECLRRAKY+G +QHNTEL+V MVRQQFRK+M ET+
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAI--QFPPQNFLIMH-------------VLSL---QLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETD

Query:  PEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        P+KIQKLKDDAARGLINHILYESE+MSGRKFSQ+S
Subjt:  PEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

XP_021889447.1 uncharacterized protein LOC110808300 isoform X1 [Carica papaya]9.9e-3470.09Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                        LQLYRECLRRAKYIGHQQHNT ++V MVRQQF+++M ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        IL+ESE+MSGRKFS+SS
Subjt:  ILYESERMSGRKFSQSS

XP_022138283.1 uncharacterized protein LOC111009499 [Momordica charantia]6.2e-3674.36Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGHQQHNTEL+V+MVRQQFRKNM ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESER+SGRKFSQSS
Subjt:  ILYESERMSGRKFSQSS

XP_022972196.1 uncharacterized protein LOC111470803 [Cucurbita maxima]9.9e-3470.09Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH+QHNT+L+V+MV+QQFRKNM ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESER++GRK SQSS
Subjt:  ILYESERMSGRKFSQSS

XP_038878962.1 uncharacterized protein LOC120071039 [Benincasa hispida]3.3e-3776.92Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGHQQHNTELLV+MVRQQFRKNMRETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESERMSGRKFSQSS
Subjt:  ILYESERMSGRKFSQSS

TrEMBL top hitse value%identityAlignment
A0A6J1C9Q7 uncharacterized protein LOC1110094993.0e-3674.36Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGHQQHNTEL+V+MVRQQFRKNM ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESER+SGRKFSQSS
Subjt:  ILYESERMSGRKFSQSS

A0A6J1HLJ6 uncharacterized protein LOC1114646711.4e-3369.23Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRAK+IGH+QHNT+L+V+MV+QQFRKNM ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESER++GRK SQSS
Subjt:  ILYESERMSGRKFSQSS

A0A6J1I5B4 uncharacterized protein LOC1114708034.8e-3470.09Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH+QHNT+L+V+MV+QQFRKNM ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESER++GRK SQSS
Subjt:  ILYESERMSGRKFSQSS

A0A7N2R6B7 Uncharacterized protein6.3e-3470.09Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH+QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESE+MSGRKFS+S+
Subjt:  ILYESERMSGRKFSQSS

D7T656 Uncharacterized protein8.2e-3470.09Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQTALPPELANNVIR                          LYRECLRRA+YIGHQQHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        ILYESE+MSGRKFS+ S
Subjt:  ILYESERMSGRKFSQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G17300.1 unknown protein2.6e-3262.39Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH
        MPSLQT+LPPELANNV+R                          LYRECLRRAK+IG QQHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINH
Subjt:  MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINH

Query:  ILYESERMSGRKFSQSS
        +L+ES +++G K SQ S
Subjt:  ILYESERMSGRKFSQSS

AT3G17300.2 unknown protein1.3e-1875.86Show/hide
Query:  QHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINH+L+ES +++G K SQ S
Subjt:  QHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCGAATAATGTCATTAGGGTTGGTTCCCTCCTATCCATTTTTGCAATACAATTTCCTCCACAAAATTTCTTAAT
TATGCATGTTTTATCACTGCAGCTTTACCGCGAGTGCCTTCGAAGAGCCAAGTATATTGGCCATCAGCAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAAT
TCAGAAAAAACATGCGTGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATACGAATCTGAGAGAATGTCAGGT
CGAAAATTCAGCCAAAGTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCGAATAATGTCATTAGGGTTGGTTCCCTCCTATCCATTTTTGCAATACAATTTCCTCCACAAAATTTCTTAAT
TATGCATGTTTTATCACTGCAGCTTTACCGCGAGTGCCTTCGAAGAGCCAAGTATATTGGCCATCAGCAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAAT
TCAGAAAAAACATGCGTGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATACGAATCTGAGAGAATGTCAGGT
CGAAAATTCAGCCAAAGTTCTTGA
Protein sequenceShow/hide protein sequence
MPSLQTALPPELANNVIRVGSLLSIFAIQFPPQNFLIMHVLSLQLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSG
RKFSQSS