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HG10012548 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012548
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDynein light chain
Genome locationChr01:22283301..22285328
RNA-Seq ExpressionHG10012548
SyntenyHG10012548
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022945423.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]6.9e-5187.18Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MN +S RSNP PLMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKHSVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAILLFKSG

XP_022955505.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata]4.9e-4988.14Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSS-AAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETN
        MNQES RSNP PLMVKPES+DRK SS AAA +KKIVIKSADMF DMQKEA+DIAIAAFEKHSVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSS-AAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAILLFKSG
        HFVYFYLDQKA+LLFKSG
Subjt:  HFVYFYLDQKAILLFKSG

XP_022973755.1 dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]8.4e-4986.32Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MN +S RSN P LMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKHSVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAILLFKSG

XP_022979977.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]2.9e-4987.18Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MNQES RSNP PLMVKPES+DRK SS AA +KKIVIKSADMF  MQKEA+DIAIAAFEKHSVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAILLFKSG

XP_038904701.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]9.2e-5695.73Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MNQESHRSNPPPLMVKPES DRKPSSAAA+SKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKD+AE IKK+FDKNHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKAILLFKSG
Subjt:  FVYFYLDQKAILLFKSG

TrEMBL top hitse value%identityAlignment
A0A6J1C8U0 Dynein light chain2.0e-4882.91Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MNQ++ R+NP  LMVKPES+DRKPSSA  L++K+VIKSADMF DMQKEA+DIAIAAFEK++VEKDVAE IK+EFDK HGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAILLFKSG

A0A6J1G0U9 Dynein light chain3.3e-5187.18Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MN +S RSNP PLMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKHSVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAILLFKSG

A0A6J1GVA3 Dynein light chain2.4e-4988.14Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSS-AAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETN
        MNQES RSNP PLMVKPES+DRK SS AAA +KKIVIKSADMF DMQKEA+DIAIAAFEKHSVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSS-AAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAILLFKSG
        HFVYFYLDQKA+LLFKSG
Subjt:  HFVYFYLDQKAILLFKSG

A0A6J1IC60 Dynein light chain4.1e-4986.32Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MN +S RSN P LMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKHSVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAILLFKSG

A0A6J1IQ69 Dynein light chain1.4e-4987.18Show/hide
Query:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH
        MNQES RSNP PLMVKPES+DRK SS AA +KKIVIKSADMF  MQKEA+DIAIAAFEKHSVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAILLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAILLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic1.1e-3070.45Show/hide
Query:  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG
        + +K VIK+ADM  DMQ++AID A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRNFGSYVTHET HF+YFYL Q AILLFKSG
Subjt:  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG

Q39580 Dynein 8 kDa light chain, flagellar outer arm1.8e-3068.89Show/hide
Query:  AALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG
        A+ S K VIK+ADM  +MQ +A+D A  A EK+++EKD+A  IKKEFD+ H PTWHCIVGRNFGSYVTHET HF+YFYL Q AILLFKSG
Subjt:  AALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic1.8e-3070.93Show/hide
Query:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG
        +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRNFGSYVTHET HF+YFYL Q AILLFKSG
Subjt:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic1.8e-3070.93Show/hide
Query:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG
        +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRNFGSYVTHET HF+YFYL Q AILLFKSG
Subjt:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic1.8e-3070.93Show/hide
Query:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG
        +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRNFGSYVTHET HF+YFYL Q AILLFKSG
Subjt:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein3.5e-1338.24Show/hide
Query:  ESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIA---IAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLF
        E QD+K          + ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  +LLF
Subjt:  ESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIA---IAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLF

Query:  KS
        K+
Subjt:  KS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 112.5e-1139.77Show/hide
Query:  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVE--KDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFK
        L  K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+ +G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVE--KDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFK

AT4G15930.1 Dynein light chain type 1 family protein4.2e-3886.05Show/hide
Query:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG
        K+ VIKSADM  DMQKEAI+IAI+AFEK+SVEKD+AE IKKEFDK HG TWHCIVGRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Subjt:  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG

AT4G27360.1 Dynein light chain type 1 family protein5.1e-1240.91Show/hide
Query:  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEK--DVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFK
        L  K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+++G  W CIVG +FGS+VTH +  F++F +    ILLFK
Subjt:  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEK--DVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFK

AT5G20110.1 Dynein light chain type 1 family protein4.9e-1548.39Show/hide
Query:  AAALSKKIVIKSADMFSDMQKEAIDIA---IAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKS
        AAA    + I +ADM   MQ  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  +LLFK+
Subjt:  AAALSKKIVIKSADMFSDMQKEAIDIA---IAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAAGAATCTCATCGCTCCAATCCTCCACCTCTAATGGTGAAGCCTGAATCTCAGGATCGCAAACCCTCATCTGCCGCTGCCCTCTCCAAGAAAATCGTCATCAA
AAGCGCCGATATGTTCAGCGACATGCAGAAGGAAGCTATTGACATTGCCATAGCTGCATTTGAGAAGCATTCCGTTGAGAAGGATGTCGCCGAACTGATAAAGAAGGAGT
TTGATAAGAATCATGGACCCACTTGGCATTGCATCGTCGGTCGTAATTTTGGTTCTTATGTAACACATGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCA
ATTCTACTTTTCAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCAAGAATCTCATCGCTCCAATCCTCCACCTCTAATGGTGAAGCCTGAATCTCAGGATCGCAAACCCTCATCTGCCGCTGCCCTCTCCAAGAAAATCGTCATCAA
AAGCGCCGATATGTTCAGCGACATGCAGAAGGAAGCTATTGACATTGCCATAGCTGCATTTGAGAAGCATTCCGTTGAGAAGGATGTCGCCGAACTGATAAAGAAGGAGT
TTGATAAGAATCATGGACCCACTTGGCATTGCATCGTCGGTCGTAATTTTGGTTCTTATGTAACACATGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCA
ATTCTACTTTTCAAATCTGGTTGA
Protein sequenceShow/hide protein sequence
MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
ILLFKSG