CuGenDBv2

Gene ID	HG10012580
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase RBBP6 isoform X2
Genome location	Chr01:22507896..22508922
RNA-Seq Expression	HG10012580
Synteny	HG10012580
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004134201.1 uncharacterized protein LOC101221899 isoform X2 [Cucumis sativus]

1.7e-60

89.17

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPNALSSINPQILDLAVRNAKASV S     SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNK-KKKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL
        DDPEASFDEGESMNSEP+KQK K KKKK KNKKNKRQKIVEDS CGV  KPKKKLRL
Subjt:  DDPEASFDEGESMNSEPRKQKNK-KKKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL

XP_022956118.1 uncharacterized protein LOC111457905 isoform X1 [Cucurbita moschata]

3.1e-59

84.57

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLRL
        DDPEASFD+GE+MNSEP+KQKNK KK KKN     KKNKRQ KIVEDSGCGV K+PKKKL+L
Subjt:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLRL

XP_022956119.1 uncharacterized protein LOC111457905 isoform X2 [Cucurbita moschata]

1.3e-60

85.09

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLRL
        DDPEASFD+GE+MNSEP+KQKNK KK KKN     KKNKRQKIVEDSGCGV K+PKKKL+L
Subjt:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLRL

XP_022979960.1 uncharacterized protein LOC111479494 [Cucurbita maxima]

7.5e-61

86.16

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLRL
        DDPEASFD+GE+MNSEP+KQKNK KK KKN   KKNKRQKIVEDSGCGV K+PKKKL+L
Subjt:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLRL

XP_038890855.1 uncharacterized protein LOC120080295 [Benincasa hispida]

1.1e-64

91.03

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDLTEEERRALRGSKFAPLPSQSTSSRS PRLAHPGGPLKTNKAAALAKFL+RKLHQDPNALSSI+PQILDLAVRNAKASVLS G+SGSGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKKKKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL
        DDPEAS D+GE+MNSEPR+QK KKKKKKKNKKNKRQKIV DSGCGV KKPKKKLRL
Subjt:  DDPEASFDEGESMNSEPRKQKNKKKKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAK0 Uncharacterized protein

8.0e-61

89.17

Show/hide

Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPNALSSINPQILDLAVRNAKASV S     SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNK-KKKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL
        DDPEASFDEGESMNSEP+KQK K KKKK KNKKNKRQKIVEDS CGV  KPKKKLRL
Subjt:  DDPEASFDEGESMNSEPRKQKNK-KKKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL

A0A1S3AY37 uncharacterized protein LOC103483832

1.3e-58

87.66

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPNA SSINPQILDLAVRNAKASV S     SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNK-KKKKKKNKKNKRQKIVEDSGCGVVKKPKKK
        DDPEASFDEGESMNSEP+KQK K KKKK KNKKNKRQKIVEDS CGV K P  K
Subjt:  DDPEASFDEGESMNSEPRKQKNK-KKKKKKNKKNKRQKIVEDSGCGVVKKPKKK

A0A6J1GVW4 uncharacterized protein LOC111457905 isoform X1

1.5e-59

84.57

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLRL
        DDPEASFD+GE+MNSEP+KQKNK KK KKN     KKNKRQ KIVEDSGCGV K+PKKKL+L
Subjt:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLRL

A0A6J1GY51 uncharacterized protein LOC111457905 isoform X2

6.2e-61

85.09

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLRL
        DDPEASFD+GE+MNSEP+KQKNK KK KKN     KKNKRQKIVEDSGCGV K+PKKKL+L
Subjt:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLRL

A0A6J1IUT6 uncharacterized protein LOC111479494

3.6e-61

86.16

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Query:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+F
Subjt:  MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLRL
        DDPEASFD+GE+MNSEP+KQKNK KK KKN   KKNKRQKIVEDSGCGV K+PKKKL+L
Subjt:  DDPEASFDEGESMNSEPRKQKNKKKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLRL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G18540.1 unknown protein

4.7e-37

59.76

Show/hide

Query:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        E+LTE+E+RALRGSKFAPL S  +SSRS  PRLAHPGGPLKTNKAAALAKFL+RKL QDPN L+SI+P +++LAV+NAK +V+SSG S SG  I HV SF
Subjt:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMNSEPRKQKNKK--------KKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL
        +D E S D+ +  N++  K+K KK        KKKKKNKK+K+Q  V++     +K+P KKL+L
Subjt:  DDPEASFDEGESMNSEPRKQKNKK--------KKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL

AT5G18540.2 unknown protein

4.7e-37

61.49

Show/hide

Query:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF
        E+LTE+E+RALRGSKFAPL S  +SSRS  PRLAHPGGPLKTNKAAALAKFL+RKL QDPN L+SI+P +++LAV+NAK +V+SSG S SG  I HV SF
Subjt:  EDLTEEERRALRGSKFAPLPSQSTSSRSH-PRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSF

Query:  DDPEASFDEGESMN---SEPRKQKNKKKKK--KKNKKNKRQKIVEDSGCGVVKKPKKKLRL
        +D E S D+ +  N   ++ +K+KN KKKK  KK KKNK+ KI  D     +K+P KKL+L
Subjt:  DDPEASFDEGESMN---SEPRKQKNKKKKK--KKNKKNKRQKIVEDSGCGVVKKPKKKLRL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGATCTTACCGAAGAAGAAAGACGTGCTTTACGGGGCAGCAAATTCGCGCCACTACCATCCCAATCCACTTCCTCTCGATCTCACCCAAGGTTGGCTCATCCAGG
TGGACCATTGAAGACCAACAAAGCGGCGGCTCTCGCCAAATTTCTCCAGAGGAAATTGCACCAAGATCCTAATGCTTTGTCTTCTATCAATCCCCAGATTTTGGACCTCG
CTGTTCGTAATGCCAAAGCTTCTGTTCTTTCCAGTGGCACGTCAGGTTCTGGCACAAATATTCTCCATGTGGACTCATTTGATGATCCTGAGGCCTCTTTTGACGAAGGG
GAATCCATGAATTCTGAGCCTAGAAAACAGAAGAACAAGAAGAAGAAGAAGAAGAAAAATAAGAAGAATAAGAGGCAAAAGATTGTTGAGGACTCCGGGTGTGGCGTTGT
GAAAAAACCCAAAAAGAAGTTGAGATTGTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MEDLTEEERRALRGSKFAPLPSQSTSSRSHPRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEG
ESMNSEPRKQKNKKKKKKKNKKNKRQKIVEDSGCGVVKKPKKKLRL

HG10012580 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome