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HG10012651 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012651
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSWIM-type domain-containing protein
Genome locationChr01:23123016..23123198
RNA-Seq ExpressionHG10012651
SyntenyHG10012651
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036768.1 uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]7.4e-1771.67Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
KAA0039601.1 uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa]8.2e-1670Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
KAA0066695.1 uncharacterized protein E6C27_scaffold271G00280 [Cucumis melo var. makuwa]2.7e-1976.67Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL  DPSLLRKP RPKSSRYHNEMDW E S+Q++CGFC Q GHN RKCP LQR+APDN
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
TYJ98405.1 uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa]7.4e-1771.67Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
TYK01705.1 uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa]8.2e-1670Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
TrEMBL top hitse value%identityAlignment
A0A5A7T1X8 SWIM-type domain-containing protein3.6e-1771.67Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
A0A5A7TD93 SWIM-type domain-containing protein4.0e-1670Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
A0A5D3BJ66 Uncharacterized protein3.6e-1771.67Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL  DPSLLRK GRPK+SRYHNEMDW+E S Q RC FC+QLGHN R C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
A0A5D3BR89 SWIM-type domain-containing protein4.0e-1670Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL +DPSLLRK GR KSSRYHNEMDW+E S Q RC FC+QLGHN  +C  L+RQAPD+
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
A0A5D3DWZ7 CCHC-type domain-containing protein1.3e-1976.67Show/hide
Query:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
        M VL  DPSLLRKP RPKSSRYHNEMDW E S+Q++CGFC Q GHN RKCP LQR+APDN
Subjt:  MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTCTTACGTGCCGACCCATCGTTGTTGAGGAAACCTGGTAGACCAAAGAGCTCGCGATACCACAATGAAATGGACTGGTCAGAATCGAGTACTCAACTACGGTG
TGGATTTTGCAATCAGTTAGGTCATAATCATAGGAAGTGTCCTTCATTACAAAGACAGGCACCCGACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTCTTACGTGCCGACCCATCGTTGTTGAGGAAACCTGGTAGACCAAAGAGCTCGCGATACCACAATGAAATGGACTGGTCAGAATCGAGTACTCAACTACGGTG
TGGATTTTGCAATCAGTTAGGTCATAATCATAGGAAGTGTCCTTCATTACAAAGACAGGCACCCGACAATTAA
Protein sequenceShow/hide protein sequence
MSVLRADPSLLRKPGRPKSSRYHNEMDWSESSTQLRCGFCNQLGHNHRKCPSLQRQAPDN