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HG10012806 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012806
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSplicing factor subunit
Genome locationChr01:24409336..24410344
RNA-Seq ExpressionHG10012806
SyntenyHG10012806
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR33493.1 hypothetical protein CICLE_v10006856mg [Citrus clementina]2.8e-4397.7Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

GAY60739.1 hypothetical protein CUMW_204370 [Citrus unshiu]2.8e-4397.7Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_006489711.1 uncharacterized protein At4g14342 [Citrus sinensis]1.3e-4398.85Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_041007902.1 uncharacterized protein At4g14342 isoform X1 [Juglans microcarpa x Juglans regia]2.8e-4397.7Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_042942701.1 uncharacterized protein At4g14342-like [Carya illinoinensis]1.3e-4398.85Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

TrEMBL top hitse value%identityAlignment
A0A0A0L732 Splicing factor subunit6.1e-4498.85Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A1S3AX72 Splicing factor subunit6.1e-4498.85Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A2I4DYR2 Splicing factor subunit6.1e-4498.85Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A5D3D0R6 Splicing factor subunit6.1e-4498.85Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

V4RHN1 Uncharacterized protein1.4e-4397.7Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143422.9e-4390.8Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 53.2e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9BWJ5 Splicing factor 3B subunit 53.2e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9LW64 Uncharacterized protein At3g233252.9e-4390.8Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 57.7e-2865.06Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R  +N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 102.1e-4490.8Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 102.1e-4490.8Show/hide
Query:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +QASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Subjt:  IQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCTGTCTGTGCTTGAGGTTGTCTCAGTGGGCGCTAATATTGGTTTTGGATATTCAATACAGGCCAGTGATAGATTTAACATCAACTCTCAGCTTGAGCACCTGCAGGC
TAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTTGCTTACT
TCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
CTCCTGTCTGTGCTTGAGGTTGTCTCAGTGGGCGCTAATATTGGTTTTGGATATTCAATACAGGCCAGTGATAGATTTAACATCAACTCTCAGCTTGAGCACCTGCAGGC
TAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTTGCTTACT
TCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA
Protein sequenceShow/hide protein sequence
LLSVLEVVSVGANIGFGYSIQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD