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HG10012943 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012943
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L37a
Genome locationChr01:25526013..25527314
RNA-Seq ExpressionHG10012943
SyntenyHG10012943
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002674 - Ribosomal protein L37ae
IPR011331 - Ribosomal protein L37ae/L37e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8520413.1 hypothetical protein F0562_014669 [Nyssa sinensis]4.3e-3691.01Show/hide
Query:  FLSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        FLS ++     GTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  FLSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

KAD4982632.1 hypothetical protein E3N88_19303 [Mikania micrantha]5.6e-3676.15Show/hide
Query:  SGSRTVDIMGSLCDGF-----LSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI
        SG    D +  +  GF       +  +  K GTRYGASLRKQIKKMEVSQHSK+FCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI
Subjt:  SGSRTVDIMGSLCDGF-----LSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI

Query:  RRLREQTES
        RRLREQTES
Subjt:  RRLREQTES

KVH97157.1 Ribosomal protein L37ae, partial [Cynara cardunculus var. scolymus]3.3e-3680.37Show/hide
Query:  SRTVDIMGSLCDGFLSREV-----LTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR
        +R +  MG L D   S EV     L+++  TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR
Subjt:  SRTVDIMGSLCDGFLSREV-----LTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR

Query:  LREQTES
        LREQTES
Subjt:  LREQTES

MBA0558823.1 hypothetical protein [Gossypium lobatum]1.1e-3695.24Show/hide
Query:  VLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        VL+  +GTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  VLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

RVW15011.1 60S ribosomal protein L37a-2 [Vitis vinifera]3.3e-3691.95Show/hide
Query:  SREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        S+  L   +GTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  SREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

TrEMBL top hitse value%identityAlignment
A0A103XUH6 Ribosomal protein L37ae (Fragment)1.6e-3680.37Show/hide
Query:  SRTVDIMGSLCDGFLSREV-----LTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR
        +R +  MG L D   S EV     L+++  TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR
Subjt:  SRTVDIMGSLCDGFLSREV-----LTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR

Query:  LREQTES
        LREQTES
Subjt:  LREQTES

A0A438BVJ3 60S ribosomal protein L37a-21.6e-3691.95Show/hide
Query:  SREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        S+  L   +GTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  SREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

A0A5J4ZNE6 Uncharacterized protein2.1e-3691.01Show/hide
Query:  FLSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        FLS ++     GTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  FLSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

A0A5N6NQU4 Uncharacterized protein2.7e-3676.15Show/hide
Query:  SGSRTVDIMGSLCDGF-----LSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI
        SG    D +  +  GF       +  +  K GTRYGASLRKQIKKMEVSQHSK+FCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI
Subjt:  SGSRTVDIMGSLCDGF-----LSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI

Query:  RRLREQTES
        RRLREQTES
Subjt:  RRLREQTES

A0A7J8M2F3 Uncharacterized protein5.5e-3795.24Show/hide
Query:  VLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        VL+  +GTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  VLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

SwissProt top hitse value%identityAlignment
P0DKK1 60S ribosomal protein L37a-11.4e-3795Show/hide
Query:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        K GTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Subjt:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

P0DKK2 60S ribosomal protein L37a-21.4e-3795Show/hide
Query:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        K GTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Subjt:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Q9SRK6 Putative 60S ribosomal protein L37a-13.1e-3793.75Show/hide
Query:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        K GTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Subjt:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Q9XHE4 60S ribosomal protein L37a1.1e-3797.5Show/hide
Query:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        K GTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Q9ZRS8 60S ribosomal protein L37a9.0e-3794.94Show/hide
Query:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
        K GTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Subjt:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE

Arabidopsis top hitse value%identityAlignment
AT3G10950.1 Zinc-binding ribosomal protein family protein2.2e-3893.75Show/hide
Query:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        K GTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Subjt:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

AT3G60245.1 Zinc-binding ribosomal protein family protein8.3e-3893.67Show/hide
Query:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
        K GTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Subjt:  KDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGAAGTAGAACTGTGGATATAATGGGATCATTGTGTGACGGTTTCTTAAGTAGAGAGGTCCTGACATTCAAAGATGGTACCAGGTATGGTGCTAGTCTGAGGAA
GCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGCGGAAAGTATGCCGTAAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTG
GGAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCGAGTGCGGTGACCGTTAGGAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGGAAGTAGAACTGTGGATATAATGGGATCATTGTGTGACGGTTTCTTAAGTAGAGAGGTCCTGACATTCAAAGATGGTACCAGGTATGGTGCTAGTCTGAGGAA
GCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGCGGAAAGTATGCCGTAAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTG
GGAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCGAGTGCGGTGACCGTTAGGAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAA
Protein sequenceShow/hide protein sequence
MSGSRTVDIMGSLCDGFLSREVLTFKDGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES