CuGenDBv2

Gene ID	HG10012955
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	10 kDa chaperonin
Genome location	Chr01:25624491..25625308
RNA-Seq Expression	HG10012955
Synteny	HG10012955
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004133964.1 10 kDa chaperonin 1, chloroplastic [Cucumis sativus]

1.0e-15

54.55

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Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELPQ----------------------ILSVGTDVG
        MAMASTF TVP PF+N P++S SVS RRLI G LRS++              VVPQADRVLVRLEELP+                      ILSVGT+VG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELPQ----------------------ILSVGTDVG

Query:  GNDIAPGKKV
        GNDIAPGKKV
Subjt:  GNDIAPGKKV

XP_008438275.1 PREDICTED: 10 kDa chaperonin isoform X1 [Cucumis melo]

3.5e-16

55.45

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Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG LRS++              VVPQADRVLVRLEELP                      +ILSVG +VG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG

Query:  GNDIAPGKKV
        GNDIAPGKKV
Subjt:  GNDIAPGKKV

XP_016898890.1 PREDICTED: 10 kDa chaperonin isoform X2 [Cucumis melo]

3.5e-16

55.45

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Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG LRS++              VVPQADRVLVRLEELP                      +ILSVG +VG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG

Query:  GNDIAPGKKV
        GNDIAPGKKV
Subjt:  GNDIAPGKKV

XP_022974766.1 10 kDa chaperonin 1, chloroplastic-like isoform X1 [Cucurbita maxima]

2.7e-13

49.54

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Query:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVGG
        MAMASTFVTVP PF +  +SSSVS+RRLI G  R +S              VVPQADRVL+RLEELP                      +ILS+G++VGG
Subjt:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVGG

Query:  NDIAPGKKV
        +D+APGKKV
Subjt:  NDIAPGKKV

XP_038880425.1 10 kDa chaperonin 1, chloroplastic-like [Benincasa hispida]

1.4e-17

57.8

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Query:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVGG
        MAMASTFVTVP   +NRP+S SVSARRLIIG LRS++              VVPQADRVLVRLEELP                      +ILSVGTDVGG
Subjt:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVGG

Query:  NDIAPGKKV
        NDIAPGKKV
Subjt:  NDIAPGKKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6L9 Uncharacterized protein

4.9e-16

54.55

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Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELPQ----------------------ILSVGTDVG
        MAMASTF TVP PF+N P++S SVS RRLI G LRS++              VVPQADRVLVRLEELP+                      ILSVGT+VG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELPQ----------------------ILSVGTDVG

Query:  GNDIAPGKKV
        GNDIAPGKKV
Subjt:  GNDIAPGKKV

A0A1S3AWL8 10 kDa chaperonin isoform X1

1.7e-16

55.45

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Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG LRS++              VVPQADRVLVRLEELP                      +ILSVG +VG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG

Query:  GNDIAPGKKV
        GNDIAPGKKV
Subjt:  GNDIAPGKKV

A0A1S4DT59 10 kDa chaperonin isoform X2

1.7e-16

55.45

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Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG LRS++              VVPQADRVLVRLEELP                      +ILSVG +VG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG

Query:  GNDIAPGKKV
        GNDIAPGKKV
Subjt:  GNDIAPGKKV

A0A5D3CZW2 10 kDa chaperonin isoform X1

1.7e-16

55.45

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Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG LRS++              VVPQADRVLVRLEELP                      +ILSVG +VG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVG

Query:  GNDIAPGKKV
        GNDIAPGKKV
Subjt:  GNDIAPGKKV

A0A6J1ICA1 10 kDa chaperonin 1, chloroplastic-like isoform X1

1.3e-13

49.54

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Query:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVGG
        MAMASTFVTVP PF +  +SSSVS+RRLI G  R +S              VVPQADRVL+RLEELP                      +ILS+G++VGG
Subjt:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRSNS--------------VVPQADRVLVRLEELP----------------------QILSVGTDVGG

Query:  NDIAPGKKV
        +D+APGKKV
Subjt:  NDIAPGKKV

SwissProt top hits

e value

%identity

Alignment

O80504 10 kDa chaperonin 2, chloroplastic

2.9e-05

35.78

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Query:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRS-------------NSVVPQADRVLVRLEELP----------------------QILSVGTDVGG
        MASTFV ++PNPF   P  ++   +A   ++G+ R                VVPQADRVLVRLE+LP                      +I+SVG++V G
Subjt:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRS-------------NSVVPQADRVLVRLEELP----------------------QILSVGTDVGG

Query:  NDIAPGKKV
          + PGK+V
Subjt:  NDIAPGKKV

Q9M1C2 10 kDa chaperonin 1, chloroplastic

5.8e-06

34.26

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Query:  MASTFVTVPNPFVNRPDSSSVSA--RRLIIGTLRSN-------------SVVPQADRVLVRLEELP----------------------QILSVGTDVGGN
        MAS+F+TVP PF++ P  ++     ++ ++G  R++              VVPQADRVLVRLE LP                      +++SVG++VG  
Subjt:  MASTFVTVPNPFVNRPDSSSVSA--RRLIIGTLRSN-------------SVVPQADRVLVRLEELP----------------------QILSVGTDVGGN

Query:  DIAPGKKV
        ++ PGKKV
Subjt:  DIAPGKKV

Arabidopsis top hits

e value

%identity

Alignment

AT2G44650.1 chloroplast chaperonin 10

2.0e-06

35.78

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Query:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRS-------------NSVVPQADRVLVRLEELP----------------------QILSVGTDVGG
        MASTFV ++PNPF   P  ++   +A   ++G+ R                VVPQADRVLVRLE+LP                      +I+SVG++V G
Subjt:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRS-------------NSVVPQADRVLVRLEELP----------------------QILSVGTDVGG

Query:  NDIAPGKKV
          + PGK+V
Subjt:  NDIAPGKKV

AT3G60210.1 GroES-like family protein

4.1e-07

34.26

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Query:  MASTFVTVPNPFVNRPDSSSVSA--RRLIIGTLRSN-------------SVVPQADRVLVRLEELP----------------------QILSVGTDVGGN
        MAS+F+TVP PF++ P  ++     ++ ++G  R++              VVPQADRVLVRLE LP                      +++SVG++VG  
Subjt:  MASTFVTVPNPFVNRPDSSSVSA--RRLIIGTLRSN-------------SVVPQADRVLVRLEELP----------------------QILSVGTDVGGN

Query:  DIAPGKKV
        ++ PGKKV
Subjt:  DIAPGKKV

Sequences

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CDS sequence

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ATGGCGATGGCGTCTACGTTCGTCACAGTGCCAAATCCCTTTGTCAACAGGCCTGATTCATCTTCCGTATCTGCACGGCGACTAATAATCGGTACGCTGAGAAGTAACTC
CGTGGTTCCTCAAGCTGATAGAGTTCTCGTCCGTCTTGAGGAGCTTCCTCAGATTCTATCCGTTGGAACAGATGTTGGAGGAAACGATATTGCACCTGGAAAGAAGGTAA
CTTAG

mRNA sequence

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Protein sequence

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MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRSNSVVPQADRVLVRLEELPQILSVGTDVGGNDIAPGKKVT

HG10012955 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome