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HG10012986 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012986
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionlate embryogenesis abundant protein 6-like
Genome locationChr01:25912127..25912699
RNA-Seq ExpressionHG10012986
SyntenyHG10012986
Gene Ontology termsGO:0009793 - embryo development ending in seed dormancy (biological process)
InterPro domainsIPR005513 - Late embryogenesis abundant protein, LEA_1 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134355.1 late embryogenesis abundant protein 6 [Cucumis sativus]4.6e-4286.18Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTA-PDCIANMAAAPGI
        MQAV++KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYA+ HTNTFV+PGGTT  PD   ++  APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTA-PDCIANMAAAPGI

Query:  TMVGAPGTVDMAG-PLPVNKKLL
        TMVGAPGTVDMAG P PVNKKLL
Subjt:  TMVGAPGTVDMAG-PLPVNKKLL

XP_008438228.1 PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo]1.7e-4488.62Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGI
        MQAVK+KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYA+ HTNTFVAPGGT T PD  AN+  APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGI

Query:  TMVGAPGTVDMAG-PLPVNKKLL
        TMVGAPGTVDMAG P P NKKLL
Subjt:  TMVGAPGTVDMAG-PLPVNKKLL

XP_022924652.1 late embryogenesis abundant protein 6-like [Cucurbita moschata]9.0e-3879.51Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI
        MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+AN HTN FVAPG GTT      N+A APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI

Query:  TMVGAPGTVDMAGPLPVNKKLL
        TMVGAPGTVDMAGP  V+KK L
Subjt:  TMVGAPGTVDMAGPLPVNKKLL

XP_022980446.1 late embryogenesis abundant protein 6-like [Cucurbita maxima]2.6e-3778.69Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI
        MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+AN HTN FVAPG GTT      N+A APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI

Query:  TMVGAPGTVDMAGPLPVNKKLL
        TMVGAPGTVDM GP  V+KK L
Subjt:  TMVGAPGTVDMAGPLPVNKKLL

XP_038878054.1 late embryogenesis abundant protein 6-like [Benincasa hispida]2.0e-4587.6Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTAPDCIANMAAAPGIT
        MQAVKDKLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEM KYAN HT+TFVAPGGT A DC A+MA APG+T
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTAPDCIANMAAAPGIT

Query:  MVGAPGTVDMAGPLPVNKKLL
        +V APGTV+MAG  PVNKKLL
Subjt:  MVGAPGTVDMAGPLPVNKKLL

TrEMBL top hitse value%identityAlignment
A0A0A0L6I7 Uncharacterized protein2.2e-4286.18Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTA-PDCIANMAAAPGI
        MQAV++KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYA+ HTNTFV+PGGTT  PD   ++  APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTA-PDCIANMAAAPGI

Query:  TMVGAPGTVDMAG-PLPVNKKLL
        TMVGAPGTVDMAG P PVNKKLL
Subjt:  TMVGAPGTVDMAG-PLPVNKKLL

A0A1S3AWI7 uncharacterized protein LOC1034833978.2e-4588.62Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGI
        MQAVK+KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYA+ HTNTFVAPGGT T PD  AN+  APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGI

Query:  TMVGAPGTVDMAG-PLPVNKKLL
        TMVGAPGTVDMAG P P NKKLL
Subjt:  TMVGAPGTVDMAG-PLPVNKKLL

A0A5A7U624 Late embryogenesis abundant protein8.2e-4588.62Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGI
        MQAVK+KLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYA+ HTNTFVAPGGT T PD  AN+  APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGT-TAPDCIANMAAAPGI

Query:  TMVGAPGTVDMAG-PLPVNKKLL
        TMVGAPGTVDMAG P P NKKLL
Subjt:  TMVGAPGTVDMAG-PLPVNKKLL

A0A6J1ED39 late embryogenesis abundant protein 6-like4.4e-3879.51Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI
        MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+AN HTN FVAPG GTT      N+A APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI

Query:  TMVGAPGTVDMAGPLPVNKKLL
        TMVGAPGTVDMAGP  V+KK L
Subjt:  TMVGAPGTVDMAGPLPVNKKLL

A0A6J1IRE5 late embryogenesis abundant protein 6-like1.3e-3778.69Show/hide
Query:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI
        MQAV+DKLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+AN HTN FVAPG GTT      N+A APG+
Subjt:  MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPG-GTTAPDCIANMAAAPGI

Query:  TMVGAPGTVDMAGPLPVNKKLL
        TMVGAPGTVDM GP  V+KK L
Subjt:  TMVGAPGTVDMAGPLPVNKKLL

SwissProt top hitse value%identityAlignment
Q39138 Late embryogenesis abundant protein 62.5e-0646.84Show/hide
Query:  MQAVKDKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIH
        MQ+ K K+ DM+   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H+AKA    +K MAK ++ H
Subjt:  MQAVKDKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIH

Arabidopsis top hitse value%identityAlignment
AT1G32560.1 Late embryogenesis abundant protein, group 1 protein1.8e-0746.84Show/hide
Query:  MQAVKDKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIH
        MQ+ K K+ DM+   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H+AKA    +K MAK ++ H
Subjt:  MQAVKDKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCAGTTAAGGATAAGCTACACGACATGAGCGTCATGCGCAAGGCCAAAGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGTTAGCAAAGGCAAGAGTAGA
AGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTATGCCAATATTC
ACACCAATACCTTTGTGGCTCCCGGCGGCACCACCGCTCCCGATTGCATCGCCAACATGGCTGCCGCTCCTGGCATAACTATGGTCGGAGCCCCCGGCACAGTCGACATG
GCCGGACCTCTTCCCGTTAATAAGAAGTTACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCAGTTAAGGATAAGCTACACGACATGAGCGTCATGCGCAAGGCCAAAGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGTTAGCAAAGGCAAGAGTAGA
AGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTATGCCAATATTC
ACACCAATACCTTTGTGGCTCCCGGCGGCACCACCGCTCCCGATTGCATCGCCAACATGGCTGCCGCTCCTGGCATAACTATGGTCGGAGCCCCCGGCACAGTCGACATG
GCCGGACCTCTTCCCGTTAATAAGAAGTTACTGTAA
Protein sequenceShow/hide protein sequence
MQAVKDKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYANIHTNTFVAPGGTTAPDCIANMAAAPGITMVGAPGTVDM
AGPLPVNKKLL