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HG10012990 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012990
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReplication factor C subunit 3-like
Genome locationChr01:25938691..25939108
RNA-Seq ExpressionHG10012990
SyntenyHG10012990
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049072.1 replication factor C subunit 3-like [Cucumis melo var. makuwa]3.2e-2283.33Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN
        +TLVDELKKFLDEELQRR+EGFYADY K+EEK+FV+E+GSGEE VVKGQ+DP+RKNVN+FLKIEGN
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN

KAG7028697.1 Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-2082.81Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE
        +TLVDELKKFLDEELQRR+E FYADY KMEEK FV EKG+GEEAV+K  HDPMRKNVN+FLKIE
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE

TYK17490.1 replication factor C subunit 3-like [Cucumis melo var. makuwa]3.2e-2283.33Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN
        +TLVDELKKFLDEELQRR+EGFYADY K+EEK+FV+E+GSGEE VVKGQ+DP+RKNVN+FLKIEGN
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN

XP_008438224.1 PREDICTED: replication factor C subunit 3-like [Cucumis melo]7.9e-2182.81Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE
        +TLVDELKKFLDEELQRR+EGFYADY K+EEK+FV+E+GSGEE VVKGQ+DP+RKNVN+FLKIE
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE

XP_011650816.1 replication factor C subunit 3 [Cucumis sativus]2.7e-2184.38Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE
        +TLVDELKKFLDEELQRR+EGFYADY K+EEK FV+EKGSGEEAV+KGQHD +RKNVN+FLKIE
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE

TrEMBL top hitse value%identityAlignment
A0A1S3AWH3 replication factor C subunit 3-like3.8e-2182.81Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE
        +TLVDELKKFLDEELQRR+EGFYADY K+EEK+FV+E+GSGEE VVKGQ+DP+RKNVN+FLKIE
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE

A0A5A7TZV7 Replication factor C subunit 3-like1.5e-2283.33Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN
        +TLVDELKKFLDEELQRR+EGFYADY K+EEK+FV+E+GSGEE VVKGQ+DP+RKNVN+FLKIEGN
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN

A0A5D3D1K1 Replication factor C subunit 3-like1.5e-2283.33Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN
        +TLVDELKKFLDEELQRR+EGFYADY K+EEK+FV+E+GSGEE VVKGQ+DP+RKNVN+FLKIEGN
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGN

A0A6J1G337 replication factor C subunit 3-like5.5e-2081.25Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE
        +TLVDELKKFLDEELQ R+E FYADY KMEEK FV EKG+GEEAV+K  HDPMRKNVN+FLKIE
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE

A0A6J1IEE5 replication factor C subunit 3-like3.2e-2081.25Show/hide
Query:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE
        +TLVDELKKFLDEELQRR+E FYADY KMEEK FV +KG+GEEAV+K  HDPMRKNVN+FLKIE
Subjt:  QTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATATGCATGTGCAGACTCTAGTAGATGAATTAAAGAAGTTTTTGGACGAAGAATTACAACGTCGAATTGAAGGTTTCTATGCTGATTATAAAAAAATGGAGGAAAA
ATCATTTGTTAATGAAAAAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGACAGCATGATCCTATGAGAAAGAATGTTAACAACTTCTTGAAGATTGAAGGTAATATATTAT
AA
mRNA sequenceShow/hide mRNA sequence
ATGCATATGCATGTGCAGACTCTAGTAGATGAATTAAAGAAGTTTTTGGACGAAGAATTACAACGTCGAATTGAAGGTTTCTATGCTGATTATAAAAAAATGGAGGAAAA
ATCATTTGTTAATGAAAAAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGACAGCATGATCCTATGAGAAAGAATGTTAACAACTTCTTGAAGATTGAAGGTAATATATTAT
AA
Protein sequenceShow/hide protein sequence
MHMHVQTLVDELKKFLDEELQRRIEGFYADYKKMEEKSFVNEKGSGEEAVVKGQHDPMRKNVNNFLKIEGNIL