; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013003 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013003
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionB3 domain-containing protein
Genome locationChr01:26023037..26024934
RNA-Seq ExpressionHG10013003
SyntenyHG10013003
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044837 - B3 domain-containing protein REM16-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650806.1 B3 domain-containing protein Os04g0386900 [Cucumis sativus]4.4e-6287.31Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEPQNGET+PLSGKPYHAFILSKSHVAPI NLVLPAKFHSILPAIVIPAVL  +GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK+GDA VFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        SILKFRVQIL GDIP +LHDKFSGETK+TPI+L+
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]1.4e-6081.34Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY +GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]8.4e-6182.09Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY +GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S+LKFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]2.4e-6080.6Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ +PAKFHS+LPAI+IPAVLY +GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_038903804.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida]1.6e-6794.03Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEPQ+GE LPLSGKPYHAFILSKSHVAPIC+LVLPAKFHSILPAIVIPAVL+ QGKKW IDYYGNRRGKALDTKQWRKFVNDN LK+GDACVFELMECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

TrEMBL top hitse value%identityAlignment
A0A0A0L3V3 TF-B3 domain-containing protein2.1e-6287.31Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEPQNGET+PLSGKPYHAFILSKSHVAPI NLVLPAKFHSILPAIVIPAVL  +GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK+GDA VFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        SILKFRVQIL GDIP +LHDKFSGETK+TPI+L+
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1CYN6 B3 domain-containing protein Os04g0386900-like6.1e-4969.4Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEP+  E  PLS KP+H  IL KSHVAP   + LPAKFHS+LPAIVI  V+Y  GK+W++DYYGNRRG+ LDT+ WRKFV++N LK GDACVFELMECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIP QLHDKF GE++DTPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1D033 B3 domain-containing protein Os04g0386900-like9.7e-5576.87Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEP+N E  PLS KP+H  IL+KSHVAPI N+ LPAKFHS+LPAIVI  VLY  GK+W +DYYGNRRGK+LDT+ WRKFVNDN LK+GDACVFELMECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S LKFRVQILRGDIP QLHDKFSGE+KDTPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like6.9e-6181.34Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY +GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like4.0e-6182.09Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY +GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S+LKFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

SwissProt top hitse value%identityAlignment
Q2QMT5 B3 domain-containing protein LOC_Os12g400905.7e-0428.09Show/hide
Query:  GKPYHAFILSKSHVAPICNLVLPAKF---HSILPAIVIPAVLYFQGKKWKIDYYG-NRRGKALDTKQWRKFVNDNLLKAGDACVFELME
        G P    +L  +HV     L++P +F   H    +  I  +   + +KW + YY  +   +  +  +W KF+ +N L+ G+ C+FELM+
Subjt:  GKPYHAFILSKSHVAPICNLVLPAKF---HSILPAIVIPAVLYFQGKKWKIDYYG-NRRGKALDTKQWRKFVNDNLLKAGDACVFELME

Q7XLP4 B3 domain-containing protein Os04g03869003.3e-2040.31Show/hide
Query:  LPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELM---ECSSSILKF
        LPL GKPY   I+ KSHV P   +V+P  F  +LP+   PA L ++G+ W + + G R  + L+   WR F  DN L+ GD CVFEL+         ++F
Subjt:  LPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELM---ECSSSILKF

Query:  RVQILRGDIPFQLHDKFSGETKDTPIYLE
        RVQ+LR +IP ++  +  G T  TPI ++
Subjt:  RVQILRGDIPFQLHDKFSGETKDTPIYLE

Q8RYD1 B3 domain-containing protein REM161.8e-0532.99Show/hide
Query:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFQGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD
        + +SHV   C L +P K+  +   ++     V+     KW  K + +G R    + T  W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFQGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD

Q9LHY9 B3 domain-containing protein Os06g01123004.2e-1539.23Show/hide
Query:  TLPL-SGKPYHAFILSKSHVAPICNLVLPAKFHSIL--PAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMEC-SSSIL
        T PL +G P+   +++KSH+ P   + +P +F   L  P     AVL+  GK W   Y G+ + K LD   W +F  DN L  GDACVFEL+   ++  L
Subjt:  TLPL-SGKPYHAFILSKSHVAPICNLVLPAKFHSIL--PAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMEC-SSSIL

Query:  KFRVQILRGDIPFQLHDKFSGETKDTPIYL
        +F+VQILRG +P ++     G T D PI +
Subjt:  KFRVQILRGDIPFQLHDKFSGETKDTPIYL

Arabidopsis top hitse value%identityAlignment
AT4G33280.1 AP2/B3-like transcriptional factor family protein1.3e-0632.99Show/hide
Query:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFQGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD
        + +SHV   C L +P K+  +   ++     V+     KW  K + +G R    + T  W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFQGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCGCAAAATGGAGAAACTTTGCCACTTTCAGGCAAACCCTACCATGCTTTTATTCTTTCTAAATCGCATGTCGCTCCCATATGTAATTTGGTTTTGCCAGCTAA
ATTCCATTCTATTTTACCTGCTATTGTGATCCCTGCGGTTCTTTACTTTCAAGGCAAGAAATGGAAGATAGATTATTATGGGAACCGACGCGGTAAGGCACTTGATACAA
AACAGTGGAGGAAGTTTGTTAATGATAATCTTCTCAAGGCTGGAGATGCTTGTGTATTTGAGCTCATGGAATGTAGTAGCAGCATACTTAAATTTAGAGTTCAAATTCTC
AGAGGTGACATCCCTTTCCAACTGCACGACAAGTTCAGTGGGGAGACAAAAGACACCCCCATATACCTTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCGCAAAATGGAGAAACTTTGCCACTTTCAGGCAAACCCTACCATGCTTTTATTCTTTCTAAATCGCATGTCGCTCCCATATGTAATTTGGTTTTGCCAGCTAA
ATTCCATTCTATTTTACCTGCTATTGTGATCCCTGCGGTTCTTTACTTTCAAGGCAAGAAATGGAAGATAGATTATTATGGGAACCGACGCGGTAAGGCACTTGATACAA
AACAGTGGAGGAAGTTTGTTAATGATAATCTTCTCAAGGCTGGAGATGCTTGTGTATTTGAGCTCATGGAATGTAGTAGCAGCATACTTAAATTTAGAGTTCAAATTCTC
AGAGGTGACATCCCTTTCCAACTGCACGACAAGTTCAGTGGGGAGACAAAAGACACCCCCATATACCTTGAGTAA
Protein sequenceShow/hide protein sequence
MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFQGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQIL
RGDIPFQLHDKFSGETKDTPIYLE