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HG10013055 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013055
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionhistone deacetylase complex subunit SAP18-like
Genome locationChr01:26494518..26497322
RNA-Seq ExpressionHG10013055
SyntenyHG10013055
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147400.1 histone deacetylase complex subunit SAP18 [Momordica charantia]3.9e-5682.73Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGRLDDSLALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

XP_022943948.1 histone deacetylase complex subunit SAP18-like [Cucurbita moschata]1.4e-5684.17Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

XP_022974173.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima]1.4e-5684.17Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

XP_023538738.1 histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo]1.4e-5684.17Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

XP_038879427.1 histone deacetylase complex subunit SAP18 [Benincasa hispida]2.1e-5785.61Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

TrEMBL top hitse value%identityAlignment
A0A1S3AVL4 histone deacetylase complex subunit SAP185.6e-5684.17Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVLREVGKTFSFGN RLDDSLAL ELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

A0A5D3D2K7 Histone deacetylase complex subunit SAP185.6e-5684.17Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVLREVGKTFSFGN RLDDSLAL ELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

A0A6J1D024 histone deacetylase complex subunit SAP181.9e-5682.73Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGRLDDSLALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

A0A6J1FXI8 histone deacetylase complex subunit SAP18-like6.6e-5784.17Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

A0A6J1IFF7 histone deacetylase complex subunit SAP18-like6.6e-5784.17Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE                 VKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVLREVGKTFSFGNGRLDDSLALAELGFQV

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP182.1e-1238.94Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV PEAR++    +FA+V+ D +   + ++E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

O55128 Histone deacetylase complex subunit SAP182.8e-1238.94Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV PEAR++    +FA+V+ D +   + ++E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

O64644 Histone deacetylase complex subunit SAP186.6e-3052.82Show/hide
Query:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLS
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DE                 VKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNGRL-DDSLALAELGFQV
        FA VYP+  G + +REVG+T ++ N +  DDS  L+EL F++
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNGRL-DDSLALAELGFQV

Q3T022 Histone deacetylase complex subunit SAP182.1e-1238.94Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV PEAR++    +FA+V+ D +   + ++E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

Q5RDT5 Histone deacetylase complex subunit SAP182.1e-1238.94Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E                 VKEV PEAR++    +FA+V+ D +   + ++E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P184.7e-3152.82Show/hide
Query:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLS
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DE                 VKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNGRL-DDSLALAELGFQV
        FA VYP+  G + +REVG+T ++ N +  DDS  L+EL F++
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNGRL-DDSLALAELGFQV

AT2G45640.2 SIN3 associated polypeptide P182.2e-2851.41Show/hide
Query:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLS
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DE                 VKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDE-----------------VKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNGRL-DDSLALAELGFQV
        FA VYP+  G +    VG+T ++ N +  DDS  L+EL F++
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNGRL-DDSLALAELGFQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCC
TTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTCAAAGAGGTAGCTCCGGAAGCCA
GGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAGAGAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGAC
GATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGGTAAAACAAACATGGCTTTCGTTTTCGCCATATCAATCCTGTATTCCTTCTCATTCTTGCTGCAATTTTTTCCACGC
AGATCGGAGATTACTTGGATGTGGCAATTATATAGGGTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCT
CCAGTGAAGAACCAAACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCC
TTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTCAAAGAGGTAGCTCCGGAAGCCA
GGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAGAGAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGAC
GATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGGTAAAACAAACATGGCTTTCGTTTTCGCCATATCAATCCTGTATTCCTTCTCATTCTTGCTGCAATTTTTTCCACGC
AGATCGGAGATTACTTGGATGTGGCAATTATATAGGGTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCT
CCAGTGAAGAACCAAACAAATGA
Protein sequenceShow/hide protein sequence
MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFSFGNGRLD
DSLALAELGFQVKQTWLSFSPYQSCIPSHSCCNFFHADRRLLGCGNYIGSVVPLYPKFLIIPISTGKGIGISFSSEEPNK