; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013167 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013167
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncyclic nucleotide-gated ion channel 1-like
Genome locationChr01:27453369..27453764
RNA-Seq ExpressionHG10013167
SyntenyHG10013167
Gene Ontology termsGO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005216 - ion channel activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008437903.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo]5.0e-2685.92Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQP
        RFYSHQW+VWAAYKIQE W DY ERKRRGGGDGRFQDALAK VGTS +FSATLYASIFIS+LLQ+VQ DQP
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQP

XP_022147437.1 LOW QUALITY PROTEIN: cyclic nucleotide-gated ion channel 1-like [Momordica charantia]1.6e-2788.57Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ
        RFYSHQWKVWAAYKIQE WHDYCERKRRGGGDGRFQDALAK  G S SF ATLYASIFISHLLQ VQ DQ
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ

XP_022147438.1 cyclic nucleotide-gated ion channel 1-like [Momordica charantia]1.7e-2687.14Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ
        RFYSHQWKVWAAYKIQE WHDYCERKRRGGGD RFQ ALAK VG S SF ATLYASIFISHLLQ VQ DQ
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ

XP_022938348.1 cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucurbita moschata]2.5e-2577.63Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCP
        RFYSHQWKVWAAYK+QE WHDY ERK+RGGGDGRFQDALAK VG S SF ATLYAS+FIS+LL AVQ DQ     P
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCP

XP_038884413.1 cyclic nucleotide-gated ion channel 1-like [Benincasa hispida]4.5e-2790Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ
        RFYSHQWKVWAAYKIQE WHD+ ERKRRGGGDGRFQDALAK VG SVSFSATLYASIFISHLLQ VQ DQ
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ

TrEMBL top hitse value%identityAlignment
A0A1S3AVQ5 cyclic nucleotide-gated ion channel 1-like2.4e-2685.92Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQP
        RFYSHQW+VWAAYKIQE W DY ERKRRGGGDGRFQDALAK VGTS +FSATLYASIFIS+LLQ+VQ DQP
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQP

A0A6J1D1B4 cyclic nucleotide-gated ion channel 1-like8.3e-2787.14Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ
        RFYSHQWKVWAAYKIQE WHDYCERKRRGGGD RFQ ALAK VG S SF ATLYASIFISHLLQ VQ DQ
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ

A0A6J1D2C8 LOW QUALITY PROTEIN: cyclic nucleotide-gated ion channel 1-like7.5e-2888.57Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ
        RFYSHQWKVWAAYKIQE WHDYCERKRRGGGDGRFQDALAK  G S SF ATLYASIFISHLLQ VQ DQ
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQ

A0A6J1FDS7 cyclic nucleotide-gated ion channel 1-like isoform X11.2e-2577.63Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCP
        RFYSHQWKVWAAYK+QE WHDY ERK+RGGGDGRFQDALAK VG S SF ATLYAS+FIS+LL AVQ DQ     P
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCP

A0A6J1FIM7 cyclic nucleotide-gated ion channel 1-like isoform X21.2e-2577.63Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCP
        RFYSHQWKVWAAYK+QE WHDY ERK+RGGGDGRFQDALAK VG S SF ATLYAS+FIS+LL AVQ DQ     P
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCP

SwissProt top hitse value%identityAlignment
O65717 Cyclic nucleotide-gated ion channel 11.1e-0743.66Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKKV-GTSVSFSATLYASIFISHLLQAVQ
        R+YS QWK WAA  IQ  W  Y ++K        + R QDALAK+  G+S S  AT+YAS F +++L+ ++
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKKV-GTSVSFSATLYASIFISHLLQAVQ

Q8GWD2 Probable cyclic nucleotide-gated ion channel 122.3e-0537.66Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCPS
        R YS QW+ WAA+ IQ  W  +C+RK       + +D      GT ++ ++TLY S F+S  LQ  + D   A+C S
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCPS

Q8RWS9 Probable cyclic nucleotide-gated ion channel 54.6e-0636.36Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV
        RFYSHQW+ WAA  IQ  W  YC+RK+    +       +   G S S  A   A+ F ++ L+ +
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV

Q9LD40 Putative cyclic nucleotide-gated ion channel 137.8e-0636.36Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKK---VGTSVSFSATLYASIFISHLLQAVQGDQPPANCPSHTSDD
        RFYS QW+ W A  IQ  W  +C RK        + RF++A+ K+     +S S  ATLYAS F S+ L+ ++ +  P   P  +  D
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKK---VGTSVSFSATLYASIFISHLLQAVQGDQPPANCPSHTSDD

Q9SKD7 Probable cyclic nucleotide-gated ion channel 32.5e-0434.18Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAK--KVGTSVSFSATLYASIFISHLLQAVQGDQPPAN
        RFYS QW+ WAA  IQ  W  +C RK        +G+  + L      G  ++  A +YAS F SH L+ ++ +    N
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAK--KVGTSVSFSATLYASIFISHLLQAVQGDQPPAN

Arabidopsis top hitse value%identityAlignment
AT4G01010.1 cyclic nucleotide-gated channel 135.5e-0736.36Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKK---VGTSVSFSATLYASIFISHLLQAVQGDQPPANCPSHTSDD
        RFYS QW+ W A  IQ  W  +C RK        + RF++A+ K+     +S S  ATLYAS F S+ L+ ++ +  P   P  +  D
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKK---VGTSVSFSATLYASIFISHLLQAVQGDQPPANCPSHTSDD

AT5G53130.1 cyclic nucleotide gated channel 17.7e-0943.66Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKKV-GTSVSFSATLYASIFISHLLQAVQ
        R+YS QWK WAA  IQ  W  Y ++K        + R QDALAK+  G+S S  AT+YAS F +++L+ ++
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGG---GDGRFQDALAKKV-GTSVSFSATLYASIFISHLLQAVQ

AT5G57940.1 cyclic nucleotide gated channel 53.3e-0736.36Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV
        RFYSHQW+ WAA  IQ  W  YC+RK+    +       +   G S S  A   A+ F ++ L+ +
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV

AT5G57940.2 cyclic nucleotide gated channel 53.3e-0736.36Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV
        RFYSHQW+ WAA  IQ  W  YC+RK+    +       +   G S S  A   A+ F ++ L+ +
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV

AT5G57940.3 cyclic nucleotide gated channel 53.3e-0736.36Show/hide
Query:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV
        RFYSHQW+ WAA  IQ  W  YC+RK+    +       +   G S S  A   A+ F ++ L+ +
Subjt:  RFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTAGGTTCTACTCTCATCAATGGAAAGTATGGGCAGCCTACAAAATACAAGAAGTTTGGCATGATTACTGCGAAAGAAAGCGGAGGGGGGGTGGAGATGGTAG
GTTTCAAGATGCATTAGCTAAAAAAGTTGGCACCTCGGTGAGCTTTAGTGCCACTCTGTATGCATCCATATTCATATCCCATCTACTGCAAGCCGTGCAGGGAGATCAAC
CCCCAGCAAACTGCCCAAGTCACACGAGTGATGACACTATTGGCGCCTCCAAAGCCAGACAAAGAGCAAGACAAACCAAACTTCACCATCATGGATCTTTAAAATGTATT
GTTTCAAGCTCTTTAACCTTCTATGTCCTGAGTTTTAGGTGCTTGGTTTCTCTGTGTGATATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTAGGTTCTACTCTCATCAATGGAAAGTATGGGCAGCCTACAAAATACAAGAAGTTTGGCATGATTACTGCGAAAGAAAGCGGAGGGGGGGTGGAGATGGTAG
GTTTCAAGATGCATTAGCTAAAAAAGTTGGCACCTCGGTGAGCTTTAGTGCCACTCTGTATGCATCCATATTCATATCCCATCTACTGCAAGCCGTGCAGGGAGATCAAC
CCCCAGCAAACTGCCCAAGTCACACGAGTGATGACACTATTGGCGCCTCCAAAGCCAGACAAAGAGCAAGACAAACCAAACTTCACCATCATGGATCTTTAAAATGTATT
GTTTCAAGCTCTTTAACCTTCTATGTCCTGAGTTTTAGGTGCTTGGTTTCTCTGTGTGATATGTGA
Protein sequenceShow/hide protein sequence
MFSRFYSHQWKVWAAYKIQEVWHDYCERKRRGGGDGRFQDALAKKVGTSVSFSATLYASIFISHLLQAVQGDQPPANCPSHTSDDTIGASKARQRARQTKLHHHGSLKCI
VSSSLTFYVLSFRCLVSLCDM