CuGenDBv2

Gene ID	HG10013181
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA polymerase II transcriptional coactivator KELP
Genome location	Chr01:27549952..27554123
RNA-Seq Expression	HG10013181
Synteny	HG10013181
Gene Ontology terms	GO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003713 - transcription coactivator activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR003173 - Transcriptional coactivator p15 (PC4), C-terminal IPR009044 - ssDNA-binding transcriptional regulator IPR014876 - DEK, C-terminal IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028543.1 RNA polymerase II transcriptional coactivator KELP, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-26

52.26

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Query:  RSQWNSLYKLQHFQSETAIHKRTVLHQETAGVFLSTPSFLVFSVLFPRKMDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLV
        R+++++ Y   + +   +  + T LHQETAG      SF     LF R MD ET+RRIEETVID+LK SNME+ TEYK+R + E+RLG+DLS+ Q K LV
Subjt:  RSQWNSLYKLQHFQSETAIHKRTVLHQETAGVFLSTPSFLVFSVLFPRKMDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLV

Query:  RNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGDLVICRV
        R+VVE FL S +ER   GKE         ENKA EQEIV+KKEIN D D VIC++
Subjt:  RNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGDLVICRV

TYK20834.1 Zinc knuckle family protein, putative isoform 2 [Cucumis melo var. makuwa]

7.4e-32

73.58

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        M+ ET+R+IEE VI+VLK+SN+EDTTE+KVR QVEER+GIDLSN+Q KLLVRNVVESFLLSMSERVCMGKED        EN+AVEQ+I+ KKE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

XP_004134299.1 uncharacterized protein LOC101205072 [Cucumis sativus]

3.0e-33

78.3

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        M+ ET+RRIEE VI+VLKKS+MEDTTE+KVR QVEERLGIDLSN+Q KLLVRNVVESFLLSMSERVCMGKED        ENKAVEQ+IV KKE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

XP_008437880.1 PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo]

7.4e-32

73.58

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        M+ ET+R+IEE VI+VLK+SN+EDTTE+KVR QVEER+GIDLSN+Q KLLVRNVVESFLLSMSERVCMGKED        EN+AVEQ+I+ KKE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

XP_038878142.1 uncharacterized protein LOC120070296 [Benincasa hispida]

6.7e-33

78.3

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        MD+ETQ +IEETVIDVLKKSNME+TTE+KVRGQVEERLGIDLSNR+YKLLVRNVVESFLLSMSE+VCMGKED        ENK ++QEI   KE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        LVICR+
Subjt:  LVICRV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3U5 CCHC-type domain-containing protein

1.5e-33

78.3

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        M+ ET+RRIEE VI+VLKKS+MEDTTE+KVR QVEERLGIDLSN+Q KLLVRNVVESFLLSMSERVCMGKED        ENKAVEQ+IV KKE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

A0A1S3AV18 uncharacterized protein LOC103483179

3.6e-32

73.58

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        M+ ET+R+IEE VI+VLK+SN+EDTTE+KVR QVEER+GIDLSN+Q KLLVRNVVESFLLSMSERVCMGKED        EN+AVEQ+I+ KKE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

A0A5A7TZ44 Zinc knuckle family protein, putative isoform 2

3.6e-32

73.58

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        M+ ET+R+IEE VI+VLK+SN+EDTTE+KVR QVEER+GIDLSN+Q KLLVRNVVESFLLSMSERVCMGKED        EN+AVEQ+I+ KKE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

A0A5D3DBA1 Zinc knuckle family protein, putative isoform 2

3.6e-32

73.58

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        M+ ET+R+IEE VI+VLK+SN+EDTTE+KVR QVEER+GIDLSN+Q KLLVRNVVESFLLSMSERVCMGKED        EN+AVEQ+I+ KKE NDDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

A0A6J1G0Z2 uncharacterized protein LOC111449676

2.8e-21

61.32

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD
        MD ET+RRI+ETVID+LK SNME+ TEYK+R + E+RLG+DLS+ Q K LVR+VVE FL S +ER   GKE         ENKA EQEIV+KKEIN D D
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKED--------ENKAVEQEIVQKKEINDDGD

Query:  LVICRV
         VIC++
Subjt:  LVICRV

SwissProt top hits

e value

%identity

Alignment

O65155 RNA polymerase II transcriptional coactivator KELP

4.7e-13

44.34

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ--------KKEINDDGD
        M++ET+ +IE+TVI++L +S+M++ TE+KVR    E+L IDLS + +K  VR+VVE FL    ER    +E EN  V +E            KE +DDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ--------KKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

Q9FHX8 Mediator-associated protein 3

2.3e-04

38.33

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Query:  KMDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFL
        ++D++ +R+I++TV  +L+ SN+   TE K R +   +L +DLS   YK++V+  VE+FL
Subjt:  KMDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G64490.1 DEK, chromatin associated protein

2.0e-06

33.73

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ
        +D + +++I+ETV  +LK+S++ + TE K R +    L +DLS   YK++VR  V+SF+    E+  M  + E   +  +IV+
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ

AT4G00980.1 zinc knuckle (CCHC-type) family protein

5.2e-07

33.67

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQKKEINDDGDLVICRV
        M+    ++IEETV  +L +S+M+  TE+K+R     +LGIDLS   +K LVR+V+E FLLS      + +       E   V    +  + +  IC++
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQKKEINDDGDLVICRV

AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP)

3.3e-14

44.34

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ--------KKEINDDGD
        M++ET+ +IE+TVI++L +S+M++ TE+KVR    E+L IDLS + +K  VR+VVE FL    ER    +E EN  V +E            KE +DDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ--------KKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

AT4G10920.2 transcriptional coactivator p15 (PC4) family protein (KELP)

3.3e-14

44.34

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Query:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ--------KKEINDDGD
        M++ET+ +IE+TVI++L +S+M++ TE+KVR    E+L IDLS + +K  VR+VVE FL    ER    +E EN  V +E            KE +DDGD
Subjt:  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQ--------KKEINDDGD

Query:  LVICRV
        L+ICR+
Subjt:  LVICRV

AT5G42060.1 DEK, chromatin associated protein

1.7e-05

38.33

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Query:  KMDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFL
        ++D++ +R+I++TV  +L+ SN+   TE K R +   +L +DLS   YK++V+  VE+FL
Subjt:  KMDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFL

Sequences

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CDS sequence

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ATGTCTGAGCGGGTGTGTCTAGGGAAAGAGGATGAGACAGGACGTAGTGTTCGTTGCGATAATAATGCGGTGGAGCAGGAGATAGTCCCGAAGAAGGAGATTAACGATGA
TGGCGACCTTGTGAATTTGCCGCTATCTGATAACAAGTGTATGCATAACAAGTGCGTGCAAGTGCATAAATATAGAAACGCAACTATGGTATCAATTAGTGAGTTTTATG
AAAAAGATGGAAGGCAGGTTCCTACTATTACAGAAGTCAACATGTCACCTAAATCATGGGCAACCTTTAAGAGTAATATTCCTGCTATAGAGGAAGCTATTTTGCAGCTG
AAAGGAAAAACAAGAATTTCTTCACCCGCCGTGCAAAGCCGAAGCCAATGGAATTCCCTCTACAAATTACAACACTTCCAATCGGAGACGGCCATTCACAAACGAACTGT
TCTTCACCAAGAAACGGCCGGCGTTTTCCTTTCAACTCCTTCTTTTCTGGTATTTTCCGTCTTGTTTCCAAGAAAGATGGACCAAGAGACCCAACGGAGAATCGAGGAAA
CCGTGATTGACGTATTGAAGAAATCGAACATGGAAGACACGACGGAGTATAAAGTTCGAGGCCAGGTCGAAGAACGGCTCGGAATCGATCTCTCAAATAGACAATACAAG
TTGCTGGTGAGGAACGTGGTGGAGAGCTTTTTACTTTCAATGTCGGAGCGGGTGTGTATGGGGAAAGAGGATGAGAATAAAGCGGTGGAGCAGGAGATAGTCCAGAAGAA
GGAGATTAACGATGATGGCGACCTAGTGATTTGCCGGGTAAAGTAA

mRNA sequence

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Protein sequence

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MSERVCLGKEDETGRSVRCDNNAVEQEIVPKKEINDDGDLVNLPLSDNKCMHNKCVQVHKYRNATMVSISEFYEKDGRQVPTITEVNMSPKSWATFKSNIPAIEEAILQL
KGKTRISSPAVQSRSQWNSLYKLQHFQSETAIHKRTVLHQETAGVFLSTPSFLVFSVLFPRKMDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYK
LLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVQKKEINDDGDLVICRVK

HG10013181 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome