; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013241 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013241
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionYqgFc domain-containing protein
Genome locationChr01:28041091..28042108
RNA-Seq ExpressionHG10013241
SyntenyHG10013241
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582728.1 hypothetical protein SDJN03_22730, partial [Cucurbita argyrosperma subsp. sororia]7.5e-6286.18Show/hide
Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQSH L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRR LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        GQKLE KLIEIAEQEEADEFIIGLPKS DGKETP SNKIRSIAGRVAA+AAE
Subjt:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

XP_022979278.1 uncharacterized protein LOC111479048 [Cucurbita maxima]2.0e-6286.84Show/hide
Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQSH L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRR LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        GQKLE KLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAE
Subjt:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

XP_038893103.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]1.0e-6690.73Show/hide
Query:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
        R Q FQPFPLQSH +  PTIFCLP  P SLAPLPPSPTLICKCQK ISSI+LPPNALRR LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPL VLELRG
Subjt:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG

Query:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVA RAAE
Subjt:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

XP_038893111.1 putative pre-16S rRNA nuclease isoform X2 [Benincasa hispida]1.0e-6690.73Show/hide
Query:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
        R Q FQPFPLQSH +  PTIFCLP  P SLAPLPPSPTLICKCQK ISSI+LPPNALRR LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPL VLELRG
Subjt:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG

Query:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVA RAAE
Subjt:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

XP_038893121.1 putative pre-16S rRNA nuclease isoform X3 [Benincasa hispida]1.0e-6690.73Show/hide
Query:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
        R Q FQPFPLQSH +  PTIFCLP  P SLAPLPPSPTLICKCQK ISSI+LPPNALRR LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPL VLELRG
Subjt:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG

Query:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVA RAAE
Subjt:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

TrEMBL top hitse value%identityAlignment
A0A0A0L3L5 YqgFc domain-containing protein9.9e-5280.13Show/hide
Query:  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKC--QKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
        Q+FQ FPLQ+H L       LPP        P SP LI K     PISSIELPPNALRR LDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
Subjt:  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKC--QKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG

Query:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        QKLE KLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
Subjt:  QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

A0A6J1CS97 uncharacterized protein LOC111014097 isoform X34.9e-5175.62Show/hide
Query:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR
        M +Q FQPFP QS       LQS TI  LP   +   P+     L C C    + ISSIELPPNALRR LDP WRGGFSLGVDLGTSRTGLALSKGFSTR
Subjt:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR

Query:  PLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        PLTVLELRG KLEVKLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAE
Subjt:  PLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

A0A6J1CTB8 uncharacterized protein LOC111014097 isoform X14.9e-5175.62Show/hide
Query:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR
        M +Q FQPFP QS       LQS TI  LP   +   P+     L C C    + ISSIELPPNALRR LDP WRGGFSLGVDLGTSRTGLALSKGFSTR
Subjt:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR

Query:  PLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        PLTVLELRG KLEVKLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAE
Subjt:  PLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

A0A6J1EA74 uncharacterized protein LOC1114321851.1e-6186.18Show/hide
Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQS  L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRR LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        GQKLE KLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAE
Subjt:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

A0A6J1IVR0 uncharacterized protein LOC1114790489.6e-6386.84Show/hide
Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQSH L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRR LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE
        GQKLE KLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAE
Subjt:  GQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAE

SwissProt top hitse value%identityAlignment
A1SJC8 Putative pre-16S rRNA nuclease2.5e-0739.56Show/hide
Query:  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEEAD---EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAA
        R G  +G+D G +R G+A S   GF   P+ TV   +G    +  I  AE++E     E ++GLP+S  G+E P + K+R  AGR+AAR A
Subjt:  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEEAD---EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAA

B8DIJ5 Putative pre-16S rRNA nuclease2.0e-0433.33Show/hide
Query:  LGVDLGTSRTGLALSK--GFSTRP-LTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAAR
        LG+D GT RTG+A S   G    P  T++     +   +L+ +AE+E A+ +++GLP   DG +T  + ++R+   R+  R
Subjt:  LGVDLGTSRTGLALSK--GFSTRP-LTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAAR

B8EPC5 Putative pre-16S rRNA nuclease1.8e-0537.5Show/hide
Query:  LGVDLGTSRTGLALS---KGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAA
        +G+DLGT   GLALS   +  +T   T+  ++  K  V+LIE+AE+ +A   IIGLP + DG + P+    R+    ++A
Subjt:  LGVDLGTSRTGLALS---KGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAA

C6C125 Putative pre-16S rRNA nuclease7.4e-0434.57Show/hide
Query:  LGVDLGTSRTGLALS--KGFSTRPLTVLE-LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAAR
        L +D GT R GLA+S        P  V+E      +  +L+EI E E+  + +IGLP S DG++T  + ++R+ A  +  R
Subjt:  LGVDLGTSRTGLALS--KGFSTRPLTVLE-LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAAR

Arabidopsis top hitse value%identityAlignment
AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-3874.26Show/hide
Query:  ELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAA
        E+PPNA+RR +D  WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EIAE+EEADEFIIGLP+S DGKET QSNKIRS+AGR+A +AA
Subjt:  ELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAA

Query:  E
        E
Subjt:  E


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGCGCAAAGTTTCCAACCCTTTCCGCTGCAAAGCCACAATCTTCAGTCTCCGACGATTTTCTGTCTTCCACCAGCCCCTTCCTCTCTTGCTCCTCTGCCTCCATC
TCCAACCCTAATTTGCAAATGCCAGAAGCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCACGCTCGACCCTCAGTGGAGAGGAGGTTTCAGTCTAGGGG
TCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAG
ATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACGCCTCAGTCAAACAAAATTCGAAGTATTGCCGGAAGGGTGGC
AGCCCGGGCAGCTGAAAGTTTAGGGGCTGGAGAGTTTACTTGCATGATGAACACGGGACAACAGCAGAAGCGGAAAGCCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGCGCAAAGTTTCCAACCCTTTCCGCTGCAAAGCCACAATCTTCAGTCTCCGACGATTTTCTGTCTTCCACCAGCCCCTTCCTCTCTTGCTCCTCTGCCTCCATC
TCCAACCCTAATTTGCAAATGCCAGAAGCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCACGCTCGACCCTCAGTGGAGAGGAGGTTTCAGTCTAGGGG
TCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAG
ATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACGCCTCAGTCAAACAAAATTCGAAGTATTGCCGGAAGGGTGGC
AGCCCGGGCAGCTGAAAGTTTAGGGGCTGGAGAGTTTACTTGCATGATGAACACGGGACAACAGCAGAAGCGGAAAGCCATATGA
Protein sequenceShow/hide protein sequence
MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRTLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIE
IAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAESLGAGEFTCMMNTGQQQKRKAI