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HG10013242 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013242
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionYqgFc domain-containing protein
Genome locationChr01:28044758..28046935
RNA-Seq ExpressionHG10013242
SyntenyHG10013242
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008437782.1 PREDICTED: uncharacterized protein LOC103483114 isoform X1 [Cucumis melo]2.0e-2077.94Show/hide
Query:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        T   + +   +GLNKSTRQKK+DAYAAMMVLERYF MSG+G EL+VPKSLVLQDKLIEGPPTDPDFKD
Subjt:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_022144406.1 uncharacterized protein LOC111014097 isoform X1 [Momordica charantia]9.2e-2189.66Show/hide
Query:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        +GLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_022144417.1 uncharacterized protein LOC111014097 isoform X2 [Momordica charantia]4.1e-2191.38Show/hide
Query:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        RGLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_038893103.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]1.1e-2180.88Show/hide
Query:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        T   + +   +GLNKSTRQKK+DAYAAMMVLERYFFMSGEG ELVVPKSL+LQDKLIEGPPTDPDFKD
Subjt:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_038893111.1 putative pre-16S rRNA nuclease isoform X2 [Benincasa hispida]3.7e-2294.83Show/hide
Query:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        RGLNKSTRQKK+DAYAAMMVLERYFFMSGEG ELVVPKSL+LQDKLIEGPPTDPDFKD
Subjt:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

TrEMBL top hitse value%identityAlignment
A0A0A0L3L5 YqgFc domain-containing protein8.4e-2076.47Show/hide
Query:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        T   + +   RGLNKSTRQKK+DAYAAMMVLERYF  SG+G EL+VPKSLVLQDKLIEGPPTDPDF+D
Subjt:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A1S3AUT7 uncharacterized protein LOC103483114 isoform X19.9e-2177.94Show/hide
Query:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        T   + +   +GLNKSTRQKK+DAYAAMMVLERYF MSG+G EL+VPKSLVLQDKLIEGPPTDPDFKD
Subjt:  TPSGKENTERRGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A6J1CTB8 uncharacterized protein LOC111014097 isoform X14.4e-2189.66Show/hide
Query:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        +GLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A6J1CTM3 uncharacterized protein LOC111014097 isoform X22.0e-2191.38Show/hide
Query:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        RGLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A6J1IVR0 uncharacterized protein LOC1114790485.4e-1986.21Show/hide
Query:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        RGLNK+TRQKK+DAYAAMMVLERYF MSGEG ELVVPK  VLQ+KLIEGPP DPDFKD
Subjt:  RGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.9e-1258.18Show/hide
Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF
        GL+KS RQ + DAYAA+++LERYF   G G E+++PKSL LQ K+  G P DPDF
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTTGTAGGGTGGGTAGGGGTGATACCACTCTGCTCTGGTCAGACTTTTGGATGGGAATCTGAGGCTCTTAAAGACAACTTCCTCTCTATATGTGTGAACTCCTT
CAAGAAGGAAGCATCTATTACTGAATTGTGGAATTCCTCCACGGCTTCTTGGAACATTTGGCCTAGAAGAAACCTGACAGAATTGGAAATTGAGGACTGTGCTAGAGTAT
CAGAGGCTTTAACGCCATCTGGAAAAGAAAATACTGAAAGAAGGGGGCTCAATAAATCTACTCGGCAGAAGAAGGTTGATGCCTATGCTGCCATGATGGTACTAGAGAGA
TATTTTTTCATGTCAGGCGAGGGAGCCGAACTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTTGTAGGGTGGGTAGGGGTGATACCACTCTGCTCTGGTCAGACTTTTGGATGGGAATCTGAGGCTCTTAAAGACAACTTCCTCTCTATATGTGTGAACTCCTT
CAAGAAGGAAGCATCTATTACTGAATTGTGGAATTCCTCCACGGCTTCTTGGAACATTTGGCCTAGAAGAAACCTGACAGAATTGGAAATTGAGGACTGTGCTAGAGTAT
CAGAGGCTTTAACGCCATCTGGAAAAGAAAATACTGAAAGAAGGGGGCTCAATAAATCTACTCGGCAGAAGAAGGTTGATGCCTATGCTGCCATGATGGTACTAGAGAGA
TATTTTTTCATGTCAGGCGAGGGAGCCGAACTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA
Protein sequenceShow/hide protein sequence
MSVVGWVGVIPLCSGQTFGWESEALKDNFLSICVNSFKKEASITELWNSSTASWNIWPRRNLTELEIEDCARVSEALTPSGKENTERRGLNKSTRQKKVDAYAAMMVLER
YFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD