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HG10013246 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013246
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S acidic ribosomal P1
Genome locationChr01:28114857..28115743
RNA-Seq ExpressionHG10013246
SyntenyHG10013246
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4356626.1 hypothetical protein F8388_006370 [Cannabis sativa]5.7e-0563.04Show/hide
Query:  EIACSYAALILYDDNIPIT------------EEPKEESDDDMGFSL
        E+AC+YA LIL+DD+IPIT            EEPKEESDDDMGFSL
Subjt:  EIACSYAALILYDDNIPIT------------EEPKEESDDDMGFSL

KAF4398843.1 hypothetical protein G4B88_023437 [Cannabis sativa]1.6e-0460.87Show/hide
Query:  EIACSYAALILYDDNIPIT------------EEPKEESDDDMGFSL
        E+AC+YA LIL+DD+IPIT            EEPKEESDDDMGF L
Subjt:  EIACSYAALILYDDNIPIT------------EEPKEESDDDMGFSL

KHG16318.1 60S acidic ribosomal P1 [Gossypium arboreum]1.2e-1089.74Show/hide
Query:  STGEIACSYAALILYDDNIPITEEPKEESDDDMGFSLFD
        S GE ACSYAALILYDD IPITEEP+EESDDDMGFSLFD
Subjt:  STGEIACSYAALILYDDNIPITEEPKEESDDDMGFSLFD

KJB41625.1 hypothetical protein B456_007G112800 [Gossypium raimondii]2.8e-0442.17Show/hide
Query:  STGEIACSYAALILYDDNIPIT--------------------------------------------EEPKEESDDDMGFSLFD
        S GE ACSYAALILYDD IPIT                                            EEP+EESDDDMGFSLFD
Subjt:  STGEIACSYAALILYDDNIPIT--------------------------------------------EEPKEESDDDMGFSLFD

PKI53910.1 hypothetical protein CRG98_025704 [Punica granatum]5.7e-0541.18Show/hide
Query:  MSTGEIACSYAALILYDDNIPIT---------------------------------------------EEPKEESDDDMGFSLFD
        MSTGE+AC+YA+LIL+DD IPIT                                             EEPKEESDDDMGFSLFD
Subjt:  MSTGEIACSYAALILYDDNIPIT---------------------------------------------EEPKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0B0NP83 60S acidic ribosomal P15.7e-1189.74Show/hide
Query:  STGEIACSYAALILYDDNIPITEEPKEESDDDMGFSLFD
        S GE ACSYAALILYDD IPITEEP+EESDDDMGFSLFD
Subjt:  STGEIACSYAALILYDDNIPITEEPKEESDDDMGFSLFD

A0A2I0JDB0 Uncharacterized protein2.7e-0541.18Show/hide
Query:  MSTGEIACSYAALILYDDNIPIT---------------------------------------------EEPKEESDDDMGFSLFD
        MSTGE+AC+YA+LIL+DD IPIT                                             EEPKEESDDDMGFSLFD
Subjt:  MSTGEIACSYAALILYDDNIPIT---------------------------------------------EEPKEESDDDMGFSLFD

A0A7J6EE66 Uncharacterized protein2.7e-0563.04Show/hide
Query:  EIACSYAALILYDDNIPIT------------EEPKEESDDDMGFSL
        E+AC+YA LIL+DD+IPIT            EEPKEESDDDMGFSL
Subjt:  EIACSYAALILYDDNIPIT------------EEPKEESDDDMGFSL

A0A803KZU9 Uncharacterized protein5.5e-0648.48Show/hide
Query:  MSTGEIACSYAALILYDDNIPIT--------------------------EEPKEESDDDMGFSLFD
        MS GE+AC+YAALIL+DD + +T                          EEPKEESDDDMGFSLFD
Subjt:  MSTGEIACSYAALILYDDNIPIT--------------------------EEPKEESDDDMGFSLFD

A0A803M376 Uncharacterized protein5.5e-0648.48Show/hide
Query:  MSTGEIACSYAALILYDDNIPIT--------------------------EEPKEESDDDMGFSLFD
        MS GE+AC+YAALIL+DD + +T                          EEPKEESDDDMGFSLFD
Subjt:  MSTGEIACSYAALILYDDNIPIT--------------------------EEPKEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24510.1 60S acidic ribosomal protein family3.0e-0472Show/hide
Query:  MSTGEIACSYAALILYDDNIPITEE
        MST E+AC+YAALIL+DD I IT E
Subjt:  MSTGEIACSYAALILYDDNIPITEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCCTATTACCGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTCAG
TTTGTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCCTATTACCGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTCAG
TTTGTTTGATTAG
Protein sequenceShow/hide protein sequence
MSTGEIACSYAALILYDDNIPITEEPKEESDDDMGFSLFD