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HG10013247 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013247
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionZinc finger CCCH domain protein
Genome locationChr01:28119269..28120238
RNA-Seq ExpressionHG10013247
SyntenyHG10013247
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR036128 - Plus3-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022924312.1 zinc finger CCCH domain-containing protein 44-like isoform X3 [Cucurbita moschata]2.0e-3683.17Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKA+ILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+I  
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF

Query:  K
        K
Subjt:  K

XP_022980124.1 zinc finger CCCH domain-containing protein 44-like isoform X1 [Cucurbita maxima]3.4e-3685.57Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKARILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD

XP_022980125.1 zinc finger CCCH domain-containing protein 44-like isoform X2 [Cucurbita maxima]6.9e-3784.16Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKARILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+I  
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF

Query:  K
        K
Subjt:  K

XP_023528723.1 zinc finger CCCH domain-containing protein 19-like isoform X2 [Cucurbita pepo subsp. pepo]3.4e-3685.57Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKARILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD

XP_023528724.1 zinc finger CCCH domain-containing protein 19-like isoform X3 [Cucurbita pepo subsp. pepo]6.9e-3784.16Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKARILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+I  
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0L6Y0 Plus3 domain-containing protein4.1e-3584.38Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPF
        MSS+DGRS IVL+VW LPNI ISMLSDSD+TEEDC+DLKEKM KGLLQR +VEE+E KARILHQDIRKNWME+EL  LQNLIDRANEKGRRSEYPF
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPF

A0A6J1E8J4 zinc finger CCCH domain-containing protein 44-like isoform X39.7e-3783.17Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKA+ILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+I  
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF

Query:  K
        K
Subjt:  K

A0A6J1E972 zinc finger CCCH domain-containing protein 44-like isoform X24.8e-3684.54Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKA+ILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD

A0A6J1IVC4 zinc finger CCCH domain-containing protein 44-like isoform X23.3e-3784.16Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKARILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+I  
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISF

Query:  K
        K
Subjt:  K

A0A6J1IYF8 zinc finger CCCH domain-containing protein 44-like isoform X11.6e-3685.57Show/hide
Query:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD
        MSSTDG S I LNVW LP+IQISMLSDSD+TEEDCQDL+EKMAKGL QR TVEE+EKKARILHQDIRK+WM+REL KLQNLIDRANEKGRRSEYPF+
Subjt:  MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFD

SwissProt top hitse value%identityAlignment
Q9FT92 Uncharacterized protein At5g084306.5e-1448Show/hide
Query:  NIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSE
        ++ IS+LSD + ++E+C+DL +++  GLL++ T+ E+E+KA+ LH+D  K+W+ RE++ L+ LIDRANEKG R E
Subjt:  NIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSE

Q9SD34 Zinc finger CCCH domain-containing protein 444.7e-0436.36Show/hide
Query:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANE
        +LN+ +   I I  LSD ++TE++C+ L++ +  GL +RLTV ++ K A  L        +E E+ KL +L DRA +
Subjt:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANE

Q9SIV5 Zinc finger CCCH domain-containing protein 198.8e-1139.53Show/hide
Query:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPF
        +LN+ +   I I ++S+ D TE++C+ LK+ +  GL+ RLTV ++++KA  L +   KN +E E+ +  +L DRA++ GRR EYP+
Subjt:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPF

Arabidopsis top hitse value%identityAlignment
AT2G16485.1 nucleic acid binding;zinc ion binding;DNA binding6.2e-1239.53Show/hide
Query:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPF
        +LN+ +   I I ++S+ D TE++C+ LK+ +  GL+ RLTV ++++KA  L +   KN +E E+ +  +L DRA++ GRR EYP+
Subjt:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPF

AT3G51120.1 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding3.3e-0536.36Show/hide
Query:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANE
        +LN+ +   I I  LSD ++TE++C+ L++ +  GL +RLTV ++ K A  L        +E E+ KL +L DRA +
Subjt:  VLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANE

AT5G08430.1 SWIB/MDM2 domain;Plus-3;GYF4.6e-1548Show/hide
Query:  NIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSE
        ++ IS+LSD + ++E+C+DL +++  GLL++ T+ E+E+KA+ LH+D  K+W+ RE++ L+ LIDRANEKG R E
Subjt:  NIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSE

AT5G23480.1 SWIB/MDM2 domain;Plus-3;GYF2.7e-0735.29Show/hide
Query:  DGRSIIVLNV-WRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQD-IRKNWMERELDKLQNLIDRANE
        DG    V N  + L ++  S LSD D ++E+C++L +++  G  +RLTV ++E+KAR LH+D + K  + +  D+ + L+D   E
Subjt:  DGRSIIVLNV-WRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQD-IRKNWMERELDKLQNLIDRANE

AT5G63700.1 zinc ion binding;DNA binding2.3e-1452.7Show/hide
Query:  IQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSE
        + IS L DSD+ EE+ +DLK+K+  GLL++ TV E+E+KA+ LH DI K+W+ R+L+ LQ  I+ ANEKG R E
Subjt:  IQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCACAGATGGAAGGAGCATTATTGTGTTGAATGTTTGGAGGTTGCCCAACATTCAAATTTCCATGCTCTCTGATTCTGACTTAACTGAGGAAGATTGTCAGGA
TCTTAAGGAAAAGATGGCAAAGGGCCTACTTCAGAGACTCACTGTTGAAGAGGTTGAGAAGAAGGCTCGAATTCTTCATCAGGATATAAGGAAGAACTGGATGGAGAGAG
AGCTAGACAAGTTGCAAAACCTCATTGATCGCGCAAATGAGAAGGGTCGAAGAAGCGAATATCCTTTTGACATTAGTTTTAAGTTTTGGGTTATTTTTCCCCTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCACAGATGGAAGGAGCATTATTGTGTTGAATGTTTGGAGGTTGCCCAACATTCAAATTTCCATGCTCTCTGATTCTGACTTAACTGAGGAAGATTGTCAGGA
TCTTAAGGAAAAGATGGCAAAGGGCCTACTTCAGAGACTCACTGTTGAAGAGGTTGAGAAGAAGGCTCGAATTCTTCATCAGGATATAAGGAAGAACTGGATGGAGAGAG
AGCTAGACAAGTTGCAAAACCTCATTGATCGCGCAAATGAGAAGGGTCGAAGAAGCGAATATCCTTTTGACATTAGTTTTAAGTTTTGGGTTATTTTTCCCCTCTTTTAA
Protein sequenceShow/hide protein sequence
MSSTDGRSIIVLNVWRLPNIQISMLSDSDLTEEDCQDLKEKMAKGLLQRLTVEEVEKKARILHQDIRKNWMERELDKLQNLIDRANEKGRRSEYPFDISFKFWVIFPLF