CuGenDBv2

Gene ID	HG10013255
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X1
Genome location	Chr01:28179231..28183520
RNA-Seq Expression	HG10013255
Synteny	HG10013255
Gene Ontology terms	GO:0009723 - response to ethylene (biological process) GO:0009751 - response to salicylic acid (biological process) GO:0042742 - defense response to bacterium (biological process) GO:0043069 - negative regulation of programmed cell death (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR011993 - PH-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_011650617.2 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X1 [Cucumis sativus]

8.7e-18

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEI VGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIM KQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

XP_011650618.2 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Cucumis sativus]

8.7e-18

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEI VGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIM KQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

XP_038874389.1 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X1 [Benincasa hispida]

2.1e-19

100

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

XP_038874398.1 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Benincasa hispida]

2.1e-19

100

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

XP_038874406.1 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X3 [Benincasa hispida]

2.1e-19

100

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J6 VASt domain-containing protein

4.2e-18

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEI VGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIM KQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

A0A1S3AUF8 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X3

2.1e-17

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEI  GEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA MTKQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

A0A1S3AUS4 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X1

2.1e-17

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEI  GEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA MTKQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

A0A1S4DSQ4 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X4

2.1e-17

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEI  GEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA MTKQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

A0A1S4DSU0 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X7

2.1e-17

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ
        AGIFPNAIEI  GEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA MTKQ
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQ

SwissProt top hits

e value

%identity

Alignment

F4HVW5 Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic

4.3e-12

71.11

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA
        AGIFPNAIEI  G KKYFFASFLSRDEAF LI+DGWL++    ++
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA

Q06681 Membrane-anchored lipid-binding protein YSP2

8.8e-05

60.53

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQ
        AGIFPN I I     KY FASF+SRD  F+LI D W Q
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G02120.1 GRAM domain family protein

3.1e-13

71.11

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Query:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA
        AGIFPNAIEI  G KKYFFASFLSRDEAF LI+DGWL++    ++
Subjt:  AGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEA

Sequences

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CDS sequence

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ATGGCAGGGATCTTTCCTAATGCCATCGAAATATTTGTTGGAGAGAAAAAGTACTTCTTTGCATCTTTTCTATCTCGTGATGAGGCCTTTAATCTCATTAACGATGGCTG
GTTGCAACATGCTAAAGGTACCGAAGCAATTATGACAAAACAGGACCAGCCACGGACCAATCAAAGCAACGTTACAACTATCAAACGACCTCATGACAAGATGCCCACAA
CTCACCTTGAGAAATGA

mRNA sequence

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Protein sequence

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MAGIFPNAIEIFVGEKKYFFASFLSRDEAFNLINDGWLQHAKGTEAIMTKQDQPRTNQSNVTTIKRPHDKMPTTHLEK

HG10013255 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome