CuGenDBv2

Gene ID	HG10013258
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S13-like
Genome location	Chr01:28213887..28214156
RNA-Seq Expression	HG10013258
Synteny	HG10013258
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7036084.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.7e-30

92.21

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV    G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

XP_004147576.1 40S ribosomal protein S13 [Cucumis sativus]

1.7e-30

93.51

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV+   GNKILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

XP_022157239.1 40S ribosomal protein S13-like [Momordica charantia]

1.5e-29

90.91

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSH IAQV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata]

8.7e-30

92.21

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV    G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]

6.6e-30

92.21

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMS8 Ribosomal_S13_N domain-containing protein

8.4e-31

93.51

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV+   GNKILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

A0A1S3ATA6 40S ribosomal protein S13-like

8.4e-31

93.51

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV+   GNKILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

A0A6J1DVX9 40S ribosomal protein S13-like

7.1e-30

90.91

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSH IAQV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

A0A6J1E411 40S ribosomal protein S13-like

4.2e-30

92.21

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV    G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

A0A6J1HYG9 40S ribosomal protein S13-like

4.2e-30

92.21

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSH IAQV    G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

2.9e-28

80.52

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSH IAQV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

P59223 40S ribosomal protein S13-1

3.2e-27

79.22

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSH I QV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

P59224 40S ribosomal protein S13-2

8.4e-28

80.52

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSH I QV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

P62302 40S ribosomal protein S13

3.6e-31

88.31

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSH IAQV    G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

Q69UI1 40S ribosomal protein S13-2

7.4e-24

72.73

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD H I  V+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

2.3e-28

79.22

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSH I QV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

AT4G00100.1 ribosomal protein S13A

6.0e-29

80.52

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSH I QV+   G+KILRILKA
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECY-GNKILRILKA

Sequences

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CDS sequence

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ATGGGTCGTATGCACAGTCGTGGTAAGGGTATCTCAGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTTAAGATCTCTTCTACGGATGTTGAAGATAATAT
CTGCAAGTTTGCAAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACAGGATTGCCCAGGTCGAGTGTTATGGAAACAAAATCTTGCGTATTC
TTAAGGCCATGGATTGGCACCGGAGATTCCAGAGGATCTCTATCACTTAA

mRNA sequence

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Protein sequence

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MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHRIAQVECYGNKILRILKAMDWHRRFQRISIT

HG10013258 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome