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HG10013280 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013280
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiontetratricopeptide repeat protein SKI3
Genome locationChr02:46781..47392
RNA-Seq ExpressionHG10013280
SyntenyHG10013280
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016441 - posttranscriptional gene silencing (biological process)
GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (biological process)
GO:1904278 - positive regulation of wax biosynthetic process (biological process)
GO:0055087 - Ski complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011654295.1 tetratricopeptide repeat protein SKI3 [Cucumis sativus]6.2e-1798Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLN+RESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
XP_038898487.1 tetratricopeptide repeat protein SKI3 isoform X1 [Benincasa hispida]4.7e-17100Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
XP_038898488.1 tetratricopeptide repeat protein SKI3 isoform X2 [Benincasa hispida]4.7e-17100Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
XP_038898489.1 tetratricopeptide repeat protein SKI3 isoform X3 [Benincasa hispida]4.7e-17100Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
XP_038898490.1 tetratricopeptide repeat protein SKI3 isoform X4 [Benincasa hispida]4.7e-17100Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
TrEMBL top hitse value%identityAlignment
A0A0A0L4Q4 Uncharacterized protein3.0e-1798Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLN+RESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
A0A5A7VBR1 Tetratricopeptide repeat protein SKI38.7e-1796Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLN+RESTS+EAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
A0A6J1DW27 tetratricopeptide repeat protein SKI3 isoform X25.1e-1798Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLA+LSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
A0A6J1DZ84 tetratricopeptide repeat protein SKI3 isoform X15.1e-1798Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLA+LSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
A0A6J1IGE1 tetratricopeptide repeat protein SKI3 isoform X28.7e-1798Show/hide
Query:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        MSADLNIRESTSDEAFESCLRAA ILPVAEFQIGLAKLSLQAGHLSSPQV
Subjt:  MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
SwissProt top hitse value%identityAlignment
F4I3Z5 Tetratricopeptide repeat protein SKI32.8e-1273.47Show/hide
Query:  SADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        SAD   RESTSDEAFESCLRAAQI P+AEFQ+GLA L+L  G++SSPQ+
Subjt:  SADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
Arabidopsis top hitse value%identityAlignment
AT1G76630.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-1373.47Show/hide
Query:  SADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        SAD   RESTSDEAFESCLRAAQI P+AEFQ+GLA L+L  G++SSPQ+
Subjt:  SADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
AT1G76630.2 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-1373.47Show/hide
Query:  SADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV
        SAD   RESTSDEAFESCLRAAQI P+AEFQ+GLA L+L  G++SSPQ+
Subjt:  SADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCTGATTTGAACATTAGGGAGTCCACATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCGAA
GCTTTCTCTGCAGGCAGGCCATCTTTCATCTCCACAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCTGATTTGAACATTAGGGAGTCCACATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCGAA
GCTTTCTCTGCAGGCAGGCCATCTTTCATCTCCACAGGTCTGA
Protein sequenceShow/hide protein sequence
MSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQV