; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013321 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013321
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription factor IIIB 90 kDa subunit-like isoform X3
Genome locationChr02:379294..380918
RNA-Seq ExpressionHG10013321
SyntenyHG10013321
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0070897 - transcription preinitiation complex assembly (biological process)
GO:0000126 - transcription factor TFIIIB complex (cellular component)
GO:0016020 - membrane (cellular component)
GO:0000995 - RNA polymerase III general transcription initiation factor activity (molecular function)
InterPro domainsIPR011665 - Brf1, TBP-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649624.1 hypothetical protein Csa_012863 [Cucumis sativus]1.0e-6264.83Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MKTADASLF MFFK K++ S S+D+SEDLGDV DSEV  YL               I   +  DQAAKKQG ++VGA+AVVKKSKKRQRK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDL-------------------------EDNHTDTMFEENVDI
        ADT T+ EM  KKRLSSKFNFD LDKLFSDTPAPDSSEKQGASS KENSSS Q HC N+L                         EDNHT+TMFEEN DI
Subjt:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDL-------------------------EDNHTDTMFEENVDI

Query:  EG-EDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        EG ED TETY NEYYDF++EEEYGYGY DYG EEEY
Subjt:  EG-EDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

XP_004142699.1 uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus]1.0e-6264.83Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MKTADASLF MFFK K++ S S+D+SEDLGDV DSEV  YL               I   +  DQAAKKQG ++VGA+AVVKKSKKRQRK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDL-------------------------EDNHTDTMFEENVDI
        ADT T+ EM  KKRLSSKFNFD LDKLFSDTPAPDSSEKQGASS KENSSS Q HC N+L                         EDNHT+TMFEEN DI
Subjt:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDL-------------------------EDNHTDTMFEENVDI

Query:  EG-EDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        EG ED TETY NEYYDF++EEEYGYGY DYG EEEY
Subjt:  EG-EDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

XP_008444162.1 PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo]1.6e-6571.16Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MK ADASLF+MF + K++ S SND+SEDLGDV DSEV  YL               I   +  DQAAKKQG +IVGAAAVVKKSKKR+RK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEE
        ADT ET+HEML KKRLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DIEGED TETY NEYYDF+NEE
Subjt:  ADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEE

Query:  EYGYGYGDYGAEEEY
        EYGYGY DYG EEEY
Subjt:  EYGYGYGDYGAEEEY

XP_016899849.1 PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo]4.0e-6470.83Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA
        MK ADASLF+MF + K++ S SND+SEDLGDV DSEV  YL               I   +  DQAAKKQG +IVGAAAVVKKSKK R+RK EAPIN PA
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA

Query:  QADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENE
        QADT ET+HEML KKRLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DIEGED TETY NEYYDF+NE
Subjt:  QADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENE

Query:  EEYGYGYGDYGAEEEY
        EEYGYGY DYG EEEY
Subjt:  EEYGYGYGDYGAEEEY

XP_038896204.1 transcription factor IIIB 60 kDa subunit-like [Benincasa hispida]3.9e-6773.33Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MKT DASLF+MFFK K++ S SN+ESEDLGDVLD EV  YL               I   +  DQ AKK GRD+VGAAA++KKSKKR R+KEAPINNPAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEEEYGYG
        A TE S EMLTKKRLSSKFNFD LDKLFSDTP PDS EKQGASS KENSSSE      DLEDNHTDTMFEENVDIEGED TETY NEYYDFENEEEYGYG
Subjt:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEEEYGYG

Query:  YGDYGAEEEY
        + DYGAEEEY
Subjt:  YGDYGAEEEY

TrEMBL top hitse value%identityAlignment
A0A0A0L0J7 BRF1 domain-containing protein4.8e-6364.83Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MKTADASLF MFFK K++ S S+D+SEDLGDV DSEV  YL               I   +  DQAAKKQG ++VGA+AVVKKSKKRQRK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDL-------------------------EDNHTDTMFEENVDI
        ADT T+ EM  KKRLSSKFNFD LDKLFSDTPAPDSSEKQGASS KENSSS Q HC N+L                         EDNHT+TMFEEN DI
Subjt:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDL-------------------------EDNHTDTMFEENVDI

Query:  EG-EDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        EG ED TETY NEYYDF++EEEYGYGY DYG EEEY
Subjt:  EG-EDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

A0A1S3B993 uncharacterized protein LOC103487591 isoform X27.9e-6671.16Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MK ADASLF+MF + K++ S SND+SEDLGDV DSEV  YL               I   +  DQAAKKQG +IVGAAAVVKKSKKR+RK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEE
        ADT ET+HEML KKRLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DIEGED TETY NEYYDF+NEE
Subjt:  ADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEE

Query:  EYGYGYGDYGAEEEY
        EYGYGY DYG EEEY
Subjt:  EYGYGYGDYGAEEEY

A0A1S4DV37 uncharacterized protein LOC103487591 isoform X12.0e-6470.83Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA
        MK ADASLF+MF + K++ S SND+SEDLGDV DSEV  YL               I   +  DQAAKKQG +IVGAAAVVKKSKK R+RK EAPIN PA
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA

Query:  QADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENE
        QADT ET+HEML KKRLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DIEGED TETY NEYYDF+NE
Subjt:  QADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENE

Query:  EEYGYGYGDYGAEEEY
        EEYGYGY DYG EEEY
Subjt:  EEYGYGYGDYGAEEEY

A0A5D3E7S6 Transcription factor IIIB 90 kDa subunit-like isoform X37.9e-6671.16Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MK ADASLF+MF + K++ S SND+SEDLGDV DSEV  YL               I   +  DQAAKKQG +IVGAAAVVKKSKKR+RK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEE
        ADT ET+HEML KKRLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DIEGED TETY NEYYDF+NEE
Subjt:  ADT-ETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEE

Query:  EYGYGYGDYGAEEEY
        EYGYGY DYG EEEY
Subjt:  EYGYGYGDYGAEEEY

A0A6J1FCP7 uncharacterized protein LOC1114429046.1e-5863.72Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MKTA+ASLF++  K K+E S+S+DESEDLGDVLDSEV  YL               +   +  +QAAKK+G D+VGAAA+VKKSKKRQR  EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYL---------------IALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENE
        A+T+T+ E+LTKKRLSSKFNFD LDKLF+DTPAPDSS+KQ ASS++ENS S Q+H  N LE+     NH DT+ EEN +D E ED  E Y NEYYD+ENE
Subjt:  ADTETSHEMLTKKRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENE

Query:  EEYGYGYGDYGAEEE
        EEYGYGYGDYG EEE
Subjt:  EEYGYGYGDYGAEEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACTGCTGATGCATCTTTGTTCACCATGTTCTTCAAACGTAAGGAAGAAAGGTCTACGTCCAATGATGAGTCGGAGGACCTTGGTGATGTTCTTGACAGTGAGGT
ACCCGACTACTTAATTGCATTAGCTTTTGGTTTCGACCAAGCAGCTAAGAAACAAGGGCGTGATATTGTTGGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGCAAA
GGAAAAAAGAAGCTCCAATAAACAACCCTGCTCAAGCCGATACTGAAACTTCGCATGAAATGCTTACTAAGAAGAGGCTCAGTTCAAAATTCAACTTTGACGCGTTGGAC
AAGCTCTTCTCTGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCGAGTTGGAAAGAAAATAGTTCATCCGAACAAAGCCATTGTTGGAACGACCTTGAAGA
CAATCATACTGACACGATGTTTGAAGAAAACGTCGACATTGAAGGTGAAGATGCCACAGAAACTTATGATAATGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGCT
ATGGATACGGTGACTATGGTGCTGAGGAGGAATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACTGCTGATGCATCTTTGTTCACCATGTTCTTCAAACGTAAGGAAGAAAGGTCTACGTCCAATGATGAGTCGGAGGACCTTGGTGATGTTCTTGACAGTGAGGT
ACCCGACTACTTAATTGCATTAGCTTTTGGTTTCGACCAAGCAGCTAAGAAACAAGGGCGTGATATTGTTGGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGCAAA
GGAAAAAAGAAGCTCCAATAAACAACCCTGCTCAAGCCGATACTGAAACTTCGCATGAAATGCTTACTAAGAAGAGGCTCAGTTCAAAATTCAACTTTGACGCGTTGGAC
AAGCTCTTCTCTGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCGAGTTGGAAAGAAAATAGTTCATCCGAACAAAGCCATTGTTGGAACGACCTTGAAGA
CAATCATACTGACACGATGTTTGAAGAAAACGTCGACATTGAAGGTGAAGATGCCACAGAAACTTATGATAATGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGCT
ATGGATACGGTGACTATGGTGCTGAGGAGGAATATTAG
Protein sequenceShow/hide protein sequence
MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEVPDYLIALAFGFDQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKRLSSKFNFDALD
KLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLEDNHTDTMFEENVDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY