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HG10013401 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013401
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein 6, chloroplastic
Genome locationChr02:1095269..1095664
RNA-Seq ExpressionHG10013401
SyntenyHG10013401
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591720.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.6e-4389.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEV-ASISSSA
        MSISTFFG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VEV AS +SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEV-ASISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

XP_008466097.1 PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo]1.0e-4793.4Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+ISVPPLLNSSASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQ
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        APLTSE
Subjt:  APLTSE

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]2.1e-4894.34Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+ISVPPLLNSSASKAAPCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ASISSSAQ
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        AP+TSE
Subjt:  APLTSE

XP_022936242.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]2.0e-4389.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSIST+FG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]5.3e-4490.65Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSISTFFG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein1.0e-4894.34Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+ISVPPLLNSSASKAAPCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ASISSSAQ
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        AP+TSE
Subjt:  APLTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic5.0e-4893.4Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+ISVPPLLNSSASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQ
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        APLTSE
Subjt:  APLTSE

A0A5A7TB88 50S ribosomal protein 65.0e-4893.4Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+ISVPPLLNSSASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQ
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        APLTSE
Subjt:  APLTSE

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like9.8e-4489.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSIST+FG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

A0A6J1IDX3 50S ribosomal protein 6, chloroplastic2.2e-4389.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSISTF G RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic1.8e-1859.04Show/hide
Query:  SISTFFGCRISVPP---LLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV
        S+S+ FGC +S+ P   L N +       + G L+IECSSRP KK+TAHHMKTRPRKS+  D  RKPTVY PLPPLPPD+T+V
Subjt:  SISTFFGCRISVPP---LLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV

P82411 50S ribosomal protein 6, chloroplastic3.5e-2249.55Show/hide
Query:  MSISTFFGCR-ISVPPLLNSSA----------SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDEN
        MS+S  FG R +++P +L +S+          S    C GG + IECSSRP KK TAHHMKTRP+K+  WDI+R P VYPPLPPLP +WT+VSS   + +
Subjt:  MSISTFFGCR-ISVPPLLNSSA----------SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDEN

Query:  VEVASISSSAQ
           ++ SSSA+
Subjt:  VEVASISSSAQ

Q9FKP0 50S ribosomal protein 6, chloroplastic1.4e-1851.02Show/hide
Query:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Subjt:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 69.7e-2051.02Show/hide
Query:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Subjt:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATAACGAATGTAATCCCATTTGATAGGTCTCCATTGTCTTTCTTACGCTCTAGCTCCGAAGGAGGAACCATGTCGATTTCCACCTTTTTCGGCTGTAGGATTTC
GGTTCCGCCATTGTTGAATTCATCTGCAAGCAAAGCAGCTCCGTGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACA
TGAAAACGAGGCCACGGAAATCGCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCGGACTGGACCTTGGTTTCATCAGTTTCC
GGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGCTTACTAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATAACGAATGTAATCCCATTTGATAGGTCTCCATTGTCTTTCTTACGCTCTAGCTCCGAAGGAGGAACCATGTCGATTTCCACCTTTTTCGGCTGTAGGATTTC
GGTTCCGCCATTGTTGAATTCATCTGCAAGCAAAGCAGCTCCGTGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACA
TGAAAACGAGGCCACGGAAATCGCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCGGACTGGACCTTGGTTTCATCAGTTTCC
GGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGCTTACTAGCGAGTAA
Protein sequenceShow/hide protein sequence
MKITNVIPFDRSPLSFLRSSSEGGTMSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVS
GDENVEVASISSSAQAPLTSE