CuGenDBv2

Gene ID	HG10013555
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CHY-type/CTCHY-type/RING-type Zinc finger protein
Genome location	Chr02:2557981..2563543
RNA-Seq Expression	HG10013555
Synteny	HG10013555
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024485.1 putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.9e-48

38.26

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Query:  QLVTIQSWRLWS------PPVLRCSYYMVSYNSSFLDELNSPRGVMMIGAVQHFLDNLLLMCCGLQLYRRKQQCHGLFDGALSFYPDSTIVLHWRILFSM
        Q++ I +W L+       P         VSYNSSFLDELNSP GVMMIGAVQ  +D LLLMCCGLQLYRRKQQCHGLFD +    P S I  ++    SM
Subjt:  QLVTIQSWRLWS------PPVLRCSYYMVSYNSSFLDELNSPRGVMMIGAVQHFLDNLLLMCCGLQLYRRKQQCHGLFDGALSFYPDSTIVLHWRILFSM

Query:  AEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY-----------------------------------
        AEVATYS+PQQIGTE NQ MTCRGKE R   TEQFDSQALPFEKSNDP EL+E  YMQ+G  AHY                                   
Subjt:  AEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY-----------------------------------

Query:  ------------VELNR-----------------------------------------------------------------------------------
                     E+N+                                                                                   
Subjt:  ------------VELNR-----------------------------------------------------------------------------------

Query:  ----------------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                                ++ACPLCSKSVCDMSKVWEKFD EIAATPIPEPYQNKMV
Subjt:  ----------------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

XP_004136332.1 probable E3 ubiquitin-protein ligase RZFP34 [Cucumis sativus]

2.6e-28

36.26

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------
        MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQ++LEREYMQHG  AHY                                  
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------

Query:  ------VELNR-----------------------------------------------------------------------------------------
               E+N+                                                                                         
Subjt:  ------VELNR-----------------------------------------------------------------------------------------

Query:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                          +YACPLCSKSVCDMSKVWEK DMEIAATPIPEPYQNKMV
Subjt:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

XP_008466354.1 PREDICTED: E3 ubiquitin-protein ligase MIEL1 isoform X1 [Cucumis melo]

1.0e-27

35.59

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------
        MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQHG  AHY                                  
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------

Query:  ------VELNR-----------------------------------------------------------------------------------------
               E+N+                                                                                         
Subjt:  ------VELNR-----------------------------------------------------------------------------------------

Query:  ------------------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                                  +YACPLCSKSVCDMSKVWEK DMEIAATPIPEPYQNKMV
Subjt:  ------------------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

XP_008466355.1 PREDICTED: E3 ubiquitin-protein ligase MIEL1 isoform X2 [Cucumis melo]

1.2e-28

36.63

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------
        MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQHG  AHY                                  
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------

Query:  ------VELNR-----------------------------------------------------------------------------------------
               E+N+                                                                                         
Subjt:  ------VELNR-----------------------------------------------------------------------------------------

Query:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                          +YACPLCSKSVCDMSKVWEK DMEIAATPIPEPYQNKMV
Subjt:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

XP_038898695.1 probable E3 ubiquitin-protein ligase RZFP34 [Benincasa hispida]

4.8e-30

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------
        MAEVATYSKPQQIGTEENQHMTCRGKE+RTVYTEQFDSQALPFEKSN+PQELLEREYM+HG  AHY                                  
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------

Query:  ------VELNR-----------------------------------------------------------------------------------------
               E+N+                                                                                         
Subjt:  ------VELNR-----------------------------------------------------------------------------------------

Query:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                          +YACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
Subjt:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHD3 Uncharacterized protein

1.3e-28

36.26

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------
        MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQ++LEREYMQHG  AHY                                  
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------

Query:  ------VELNR-----------------------------------------------------------------------------------------
               E+N+                                                                                         
Subjt:  ------VELNR-----------------------------------------------------------------------------------------

Query:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                          +YACPLCSKSVCDMSKVWEK DMEIAATPIPEPYQNKMV
Subjt:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

A0A1S3CR85 E3 ubiquitin-protein ligase MIEL1 isoform X1

4.8e-28

35.59

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------
        MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQHG  AHY                                  
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------

Query:  ------VELNR-----------------------------------------------------------------------------------------
               E+N+                                                                                         
Subjt:  ------VELNR-----------------------------------------------------------------------------------------

Query:  ------------------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                                  +YACPLCSKSVCDMSKVWEK DMEIAATPIPEPYQNKMV
Subjt:  ------------------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

A0A1S3CSD5 E3 ubiquitin-protein ligase MIEL1 isoform X2

5.7e-29

36.63

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------
        MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQHG  AHY                                  
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHY----------------------------------

Query:  ------VELNR-----------------------------------------------------------------------------------------
               E+N+                                                                                         
Subjt:  ------VELNR-----------------------------------------------------------------------------------------

Query:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                          +YACPLCSKSVCDMSKVWEK DMEIAATPIPEPYQNKMV
Subjt:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

A0A6J1BQ41 probable E3 ubiquitin-protein ligase RZFP34 isoform X1

5.0e-25

34.07

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHYVELNR-----------------------------
        MAEVATYSKPQQIGTEENQHMTCRGKEIRT+YTEQ DSQ L FEKSNDP+ELLE  +MQ+G  AHY    R                             
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHYVELNR-----------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                          +YACPLCSKSVCDMSKVWEK+DMEIAATPIPEPYQNKMV
Subjt:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

A0A6J1BTA4 probable E3 ubiquitin-protein ligase RZFP34 isoform X2

5.0e-25

34.07

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Query:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHYVELNR-----------------------------
        MAEVATYSKPQQIGTEENQHMTCRGKEIRT+YTEQ DSQ L FEKSNDP+ELLE  +MQ+G  AHY    R                             
Subjt:  MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHYVELNR-----------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
                                          +YACPLCSKSVCDMSKVWEK+DMEIAATPIPEPYQNKMV
Subjt:  ----------------------------------RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

SwissProt top hits

e value

%identity

Alignment

Q5JL96 Probable E3 ubiquitin-protein ligase RZFP34

4.5e-07

46.38

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Query:  FEKSNDPQELLEREYMQHGLYAHYVELNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVR
        FE +ND   +L   +  H      +E + ++ACPLCSKSVCDMSK WE+ D E+A   I +   NKMVR
Subjt:  FEKSNDPQELLEREYMQHGLYAHYVELNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVR

Q8VZK0 E3 ubiquitin-protein ligase MIEL1

5.0e-06

51.28

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Query:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
        ++ CP+CS+SV DMSK W++ D EI AT +P  Y++K V
Subjt:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

Q9FFB6 E3 ubiquitin-protein ligase RZFP34

2.0e-10

61.9

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Query:  LNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
        L+ RY CP+CSKS+CDMS +W+K D E+AA P+P+ Y+NKMV
Subjt:  LNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

Arabidopsis top hits

e value

%identity

Alignment

AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein

1.4e-11

61.9

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Query:  LNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
        L+ RY CP+CSKS+CDMS +W+K D E+AA P+P+ Y+NKMV
Subjt:  LNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

AT5G25560.1 CHY-type/CTCHY-type/RING-type Zinc finger protein

2.2e-17

75.47

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Query:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ
        +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV+      GK  E Q
Subjt:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ

AT5G25560.2 CHY-type/CTCHY-type/RING-type Zinc finger protein

8.5e-17

92.31

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Query:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV
        +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV
Subjt:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMV

AT5G25560.3 CHY-type/CTCHY-type/RING-type Zinc finger protein

2.2e-17

75.47

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Query:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ
        +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV+      GK  E Q
Subjt:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ

AT5G25560.4 CHY-type/CTCHY-type/RING-type Zinc finger protein

2.2e-17

75.47

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Query:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ
        +YACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN+MV+      GK  E Q
Subjt:  RYACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKMVRPCYFRIGKGKEKQ

Sequences

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CDS sequence

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ATGCGGAGATTCAATTTGAGTTTAGTGGGAATTGAATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAATTGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCC
CCCAGTGCTGCGTTGTAGTTATTATATGGTCTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCGTGGAGTTATGATGATTGGAGCTGTACAACATTTCTTGG
ATAATTTGTTGCTGATGTGCTGTGGTCTGCAGCTGTATAGAAGAAAGCAACAGTGTCATGGCCTGTTTGACGGTGCTTTAAGCTTCTATCCAGATTCAACCATTGTCCTG
CATTGGAGGATATTATTTTCCATGGCAGAGGTTGCAACTTACTCCAAGCCTCAACAAATTGGGACAGAGGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAAC
TGTGTACACTGAGCAGTTTGATTCTCAGGCCTTGCCCTTTGAAAAATCAAATGATCCCCAAGAGTTGTTGGAGAGGGAATACATGCAACATGGGTTATATGCTCACTATG
TGGAACTGAACAGGAGATATGCTTGCCCTCTCTGCTCCAAGTCCGTTTGTGATATGTCCAAAGTGTGGGAAAAATTTGACATGGAAATCGCTGCTACGCCCATTCCAGAG
CCATACCAAAATAAAATGGTAAGACCATGCTACTTCCGCATTGGGAAGGGCAAGGAAAAGCAGGGAAGCCAATGCGCCAAAAGACCTGTCCTACTCAACCAAATGCTTCT
CAATCAACCTATGAAGGGAATCGACATCAGGGACCTCATTCAAGAAGCATATCTCTTTACAAAAACTCCACAAATACCACATGATGATCAGCAAGTGGTCGATCTCCTCC
CTAAAACTCAAATTTCTCCAACCTCTGCCAACACCAAACAACCCAACATTGTGACTGCTCAGAGTTCACTCCACCCTGCATAA

mRNA sequence

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Protein sequence

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MRRFNLSLVGIESGVFNKSSDHDVQLVTIQSWRLWSPPVLRCSYYMVSYNSSFLDELNSPRGVMMIGAVQHFLDNLLLMCCGLQLYRRKQQCHGLFDGALSFYPDSTIVL
HWRILFSMAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGLYAHYVELNRRYACPLCSKSVCDMSKVWEKFDMEIAATPIPE
PYQNKMVRPCYFRIGKGKEKQGSQCAKRPVLLNQMLLNQPMKGIDIRDLIQEAYLFTKTPQIPHDDQQVVDLLPKTQISPTSANTKQPNIVTAQSSLHPA

HG10013555 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome