; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013588 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013588
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCoatomer subunit zeta
Genome locationChr02:2801640..2804796
RNA-Seq ExpressionHG10013588
SyntenyHG10013588
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR022775 - AP complex, mu/sigma subunit
IPR039652 - Coatomer subunit zeta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038809.1 SNARE-like superfamily protein [Cucumis melo var. makuwa]2.3e-7699.32Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGD+AVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_004136347.1 TSET complex member tstD [Cucumis sativus]1.5e-7598.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_008466411.1 PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo]1.8e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_022134177.1 uncharacterized protein LOC111006502 [Momordica charantia]2.0e-7598.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_038896955.1 TSET complex member tstD [Benincasa hispida]4.0e-7699.32Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        +PTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

TrEMBL top hitse value%identityAlignment
A0A0A0LHA5 Coatomer subunit zeta7.3e-7698.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A1S3CRC6 Coatomer subunit zeta8.6e-77100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A5A7TBS4 Coatomer subunit zeta1.1e-7699.32Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGD+AVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A5D3E691 Coatomer subunit zeta8.6e-77100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A6J1BYX2 Coatomer subunit zeta9.5e-7698.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

SwissProt top hitse value%identityAlignment
C0HLF1 TSET complex member tstD5.3e-1531.94Show/hide
Query:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDAC-
        M+ ++LI N+ GNI+  +++  +  E++  +   L +   D    +KNE+  V        V+T +GD+ +++ G +E DELAL++V F I  ++KD C 
Subjt:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDAC-

Query:  GKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK
         K  TE+ F+++  K  L LDEI+  G L+  + + I+    LK
Subjt:  GKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK

Q54CA7 Probable coatomer subunit zeta-B9.4e-0428.78Show/hide
Query:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKD-EYDELALAEVIFVITSAIKDACGK
        A+++ ++ G  L   F+  P      L  +    KL  +  K   N EL +  +K   ++ +   DV ++VVG     +ELAL +V+  + S  K AC  
Subjt:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKD-EYDELALAEVIFVITSAIKDACGK

Query:  AP----TERLFLDKYGKICLCLDEIVWTGILENTEKDRI
              T++ FL+ Y  I L +DEIV  GI+   +++ I
Subjt:  AP----TERLFLDKYGKICLCLDEIVWTGILENTEKDRI

Q5NA06 Coatomer subunit zeta-31.3e-0526.72Show/hide
Query:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTE
        +L+ +S G  +  +++          ++F   + A   K +   E  +    S ++VY  + D+  +V G DE +EL LA V+   + AI          
Subjt:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTE

Query:  RLFLDKYGKICLCLDEIVWTGILENTEKDRI
        R  L+    I LCLDE+V  GI+  T+   I
Subjt:  RLFLDKYGKICLCLDEIVWTGILENTEKDRI

Arabidopsis top hitse value%identityAlignment
AT1G15370.1 SNARE-like superfamily protein1.7e-6982.19Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        M+LAVL ANSVGN+L+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VA HKSVYIVYT+LGDV++++VGKDEYDELALAE I++IT+A+KD CGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE
         PTER+FLDKYG+ICLCLDEIVW G+LENT+KDRIKRLIRLKPP+E
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTATCATAATTCTCGAATCAGGTTATACTATCTCCATTTCCATACAAGCCCTAATTGGTGCCTTCAAGGAAAAAGGGAGCGAGCGAAAATCTGGGATTGTAAGAT
TTATTTCGTAGCTACGAATTTTCTCGGTGGCCAGACGCCCTTTGGGAGATATTTTCCTTCCGAAATTCCGATCGAAGAGTTGAAAGCTGACGGCGAAAGATCAGGCATGT
TGCTGGCTGTGCTAATCGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCGGCAGAGGAACGATTGCATTGGCGATCCTTTTTAGTGAAGCTGGGA
GCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTATATGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGTGCTTGGCGATGTTGCAGTTTATGTTGTTGGGAA
GGACGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAATAACATCAGCGATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGCTTGTTTCTTGACAAATATG
GAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAGAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGGTTAAAACCTCCCAATGAGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTATCATAATTCTCGAATCAGGTTATACTATCTCCATTTCCATACAAGCCCTAATTGGTGCCTTCAAGGAAAAAGGGAGCGAGCGAAAATCTGGGATTGTAAGAT
TTATTTCGTAGCTACGAATTTTCTCGGTGGCCAGACGCCCTTTGGGAGATATTTTCCTTCCGAAATTCCGATCGAAGAGTTGAAAGCTGACGGCGAAAGATCAGGCATGT
TGCTGGCTGTGCTAATCGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCGGCAGAGGAACGATTGCATTGGCGATCCTTTTTAGTGAAGCTGGGA
GCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTATATGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGTGCTTGGCGATGTTGCAGTTTATGTTGTTGGGAA
GGACGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAATAACATCAGCGATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGCTTGTTTCTTGACAAATATG
GAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAGAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGGTTAAAACCTCCCAATGAGTTTTGA
Protein sequenceShow/hide protein sequence
MRYHNSRIRLYYLHFHTSPNWCLQGKRERAKIWDCKIYFVATNFLGGQTPFGRYFPSEIPIEELKADGERSGMLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLG
ADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF