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HG10013626 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013626
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L39
Genome locationChr02:3147589..3147807
RNA-Seq ExpressionHG10013626
SyntenyHG10013626
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2068461.1 unnamed protein product [Brassica napus]7.1e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAA0064900.1 hypothetical protein E6C27_scaffold82G002160 [Cucumis melo var. makuwa]7.1e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG6481052.1 hypothetical protein ZIOFF_057644 [Zingiber officinale]7.1e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
NP_180093.1 Ribosomal protein L39 family protein [Arabidopsis thaliana]7.1e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
XP_031480823.1 60S ribosomal protein L39-like [Nymphaea colorata]7.1e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
TrEMBL top hitse value%identityAlignment
A0A0A0LYE1 Uncharacterized protein3.5e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A0D3BLW0 Uncharacterized protein3.5e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A1S3BCZ7 60S ribosomal protein L393.5e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A397Y3W1 Uncharacterized protein3.5e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6J1HZ80 60S ribosomal protein L393.5e-12100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-19.3e-15100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51425 60S ribosomal protein L397.9e-1494.29Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51426 60S ribosomal protein L39-27.9e-1494.29Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q5SMI4 60S ribosomal protein L39-37.9e-1494.29Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q6KAJ8 60S ribosomal protein L39-17.9e-1494.29Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein6.6e-16100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT3G02190.1 Ribosomal protein L39 family protein2.1e-1494.29Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT4G31985.1 Ribosomal protein L39 family protein6.6e-16100Show/hide
Query:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGAATAGGCCAATCCCGCACTGGATCCGCCTGAGAACAGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGTACCAAGCTAGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGAATAGGCCAATCCCGCACTGGATCCGCCTGAGAACAGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGTACCAAGCTAGGGTTTTGA
Protein sequenceShow/hide protein sequence
MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF