; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013678 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013678
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationChr02:3702669..3704093
RNA-Seq ExpressionHG10013678
SyntenyHG10013678
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]8.1e-7397.28Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPASQ+L QTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIEL +PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]1.2e-7195.92Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPASQ+L QTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIE+ +PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]9.6e-6689.12Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPAS ++ Q+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIELTEP +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]4.0e-6494.81Show/hide
Query:  APRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        A R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
Subjt:  APRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        DKWGRIE+ EPE+FVVKEDNNLSLVEYELVNVAEE
Subjt:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]9.0e-7296.6Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPASQ+L Q+NAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIEL EPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein3.9e-7397.28Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPASQ+L QTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIEL +PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

A0A1S3CKC4 uncharacterized protein At4g28440-like5.7e-7295.92Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPASQ+L QTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIE+ +PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

A0A5D3DWE0 Nucleic acid-binding5.7e-7295.92Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPASQ+L QTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIE+ +PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1CG19 uncharacterized protein At4g28440-like4.6e-6689.12Show/hide
Query:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK
        TPAS ++ Q+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAK
Subjt:  TPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAK

Query:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IDMFKGSMRLAVDKWGRIELTEP +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1FBC1 uncharacterized protein At4g28440-like2.6e-6494.07Show/hide
Query:  APRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        A R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
Subjt:  APRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE
        DKWGRIE+ EPE+FVVKEDNNLSL+EYELVNVAEE
Subjt:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284402.2e-4468.18Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNV
        DKWGRIE T    F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.0e-4466.92Show/hide
Query:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW
        LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+W
Subjt:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW

Query:  GRIELT-EPEDFVVKEDNNLSLVEYELVNV
        GR+E+  EP D  VK+DNNLSL+EYELV+V
Subjt:  GRIELT-EPEDFVVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.0e-4466.92Show/hide
Query:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW
        LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+W
Subjt:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW

Query:  GRIELT-EPEDFVVKEDNNLSLVEYELVNV
        GR+E+  EP D  VK+DNNLSL+EYELV+V
Subjt:  GRIELT-EPEDFVVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein6.7e-4967.42Show/hide
Query:  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDK
        + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDK
Subjt:  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDK

Query:  WGRIELTEPEDFVVKEDNNLSLVEYELVNVAE
        WGR+E+TEP  F VKED N+SL+EYELVNV E
Subjt:  WGRIELTEPEDFVVKEDNNLSLVEYELVNVAE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein4.2e-5176.92Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGR
        +KPVFVK++QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG T+ LRNAKIDMFKGSMRLAVDKWGR
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGR

Query:  IELTEPEDFVVKEDNNLSLVEYELVNVAEE
        IE TEP D  VKEDNNLSLVEYELVNV EE
Subjt:  IELTEPEDFVVKEDNNLSLVEYELVNVAEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein1.5e-4568.18Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNV
        DKWGRIE T    F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELTEPEDFVVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCCGCATCGCAGGACCTGCACCAGACCAATGCAGCGCCTAGACCTGGCCTCAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAGCCCGGCACCAATGG
CCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCGGTCTCTCAGCACCTTCGACAGACGCGGATCGCCGAGTGCCTTGTTGGCGACG
AAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATG
AGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACTGAGCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGC
AGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGCCCGCATCGCAGGACCTGCACCAGACCAATGCAGCGCCTAGACCTGGCCTCAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAGCCCGGCACCAATGG
CCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCGGTCTCTCAGCACCTTCGACAGACGCGGATCGCCGAGTGCCTTGTTGGCGACG
AAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATG
AGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACTGAGCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGC
AGAGGAATGA
Protein sequenceShow/hide protein sequence
MATPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSM
RLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE