; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013683 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013683
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA exonuclease 4
Genome locationChr02:3723177..3727626
RNA-Seq ExpressionHG10013683
SyntenyHG10013683
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649831.1 hypothetical protein Csa_012901 [Cucumis sativus]2.8e-13295.04Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M+SQLKK+PKPKLLNPNWALLQQKL PHGSNH  S++V KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGG
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGG

XP_004146040.1 RNA exonuclease 4 [Cucumis sativus]5.6e-13395.06Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M+SQLKK+PKPKLLNPNWALLQQKL PHGSNH  S++V KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

XP_008463709.1 PREDICTED: RNA exonuclease 4 [Cucumis melo]6.4e-13796.2Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M SQLKK+PKPKLLNPNWA+LQQKLKPHGSNHS++S+VPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

XP_038897121.1 RNA exonuclease 4 isoform X2 [Benincasa hispida]1.8e-13193.7Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQ-------KLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQG
        MESQLKK+ KPKLLNPNWALLQQ       KLKP GSNHSRSS+VPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTD VAMDCEMVGVGQG
Subjt:  MESQLKKSPKPKLLNPNWALLQQ-------KLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQG

Query:  NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEG
        NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKEG
Subjt:  NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEG

Query:  CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK EIKLKLKQKKRK RKKSKDGGG
Subjt:  CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

XP_038897122.1 RNA exonuclease 4 isoform X3 [Benincasa hispida]1.5e-13396.2Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        MESQLKK+ KPKLLNPNWALLQQKLKP GSNHSRSS+VPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTD VAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKEGCRRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK EIKLKLKQKKRK RKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 42.7e-13395.06Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M+SQLKK+PKPKLLNPNWALLQQKL PHGSNH  S++V KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

A0A1S3CJW0 RNA exonuclease 43.1e-13796.2Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M SQLKK+PKPKLLNPNWA+LQQKLKPHGSNHS++S+VPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

A0A6J1FBB2 RNA exonuclease 41.5e-12892.02Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        MESQLKKS KPKLLNPNWALLQQKL PHGS   RSSSVPKSEASSKTLLGKRK+RSD ES+HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VT+VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQ+ GCRRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAE LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE+KLKLKQKKRKPRKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

A0A6J1IH78 RNA exonuclease 42.5e-12690.49Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        MESQLKKS K KLLNPNWALLQQKL PHGS   RSS+VPKSEASSKTLLGKRK+RSD ES+HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VT+VNKWGNVIY+EFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQ+ GCRR+LRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAE LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE+KLKLKQKKRKPRKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

E5GBF8 RNA exonuclease 43.1e-13796.2Show/hide
Query:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M SQLKK+PKPKLLNPNWA+LQQKLKPHGSNHS++S+VPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGG
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGG

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 42.0e-4052.17Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKD
        +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  +K A  F   QK+ A++++G+ILVGHAL++DL+AL+LSHPK  
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKD

Query:  VRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK
        +RDTS +  F+K   +G   +L+ L  E L + IQ GEH  VEDAR+ MLLY+K++ E+EK
Subjt:  VRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK

Q6DEW6 RNA exonuclease 45.6e-4349.73Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D+K  + F  VQ  VAE+++G+ LVGHA+ NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+       K + P+K
Subjt:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRK

Q6PAQ4 RNA exonuclease 45.6e-4349.7Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++F  V+K VAE++KG+ILVGHAL NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS
        PKK +RDT +++ F+   +  R +L+ L+ + LG+ +Q  EHC ++DA++AM LY   ++EWE S
Subjt:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS

Q91560 RNA exonuclease 48.6e-4449.19Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D+KK + F  VQK V+E+++G+ LVGHA+ NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIK--LKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+    + + +K + P+K
Subjt:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIK--LKLKQKKRKPRK

Q9GZR2 RNA exonuclease 43.3e-4350.9Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++   VQK VAE++KG+ILVGHAL NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
        PKK +RDT +Y+ F  Q +  R +LR L+ + LG+++Q  EHC ++DA++AM LY   +KEWE   +
Subjt:  PKKDVRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein2.0e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT2G48100.2 Exonuclease family protein2.0e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT2G48100.3 Exonuclease family protein2.0e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.8e-9568.16Show/hide
Query:  MESQLKKSPKPKL------LNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGN
        M S LK+ PK K+      LNPNW+LLQQKLK     ++R SS P++ +S   +LGKRKER D E +  + N L PVNDD SLTDEVAMDCEMVGV QG 
Subjt:  MESQLKKSPKPKL------LNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGN

Query:  KSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGC
        KSALGRVTLVNKWGNV+YDEFVRP+E VVDFRT ISGIRP DL+KAKDF   Q +VAELIKGKILVGHAL NDLKALLL+HPKKD+RDT EYQ F K   
Subjt:  KSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGC

Query:  RRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDG
        R++L+HLA+E LG +IQNGEHCP++DAR+AM+LYQK RKEWEK+VK + ++ LKQKKRKP+KK+K G
Subjt:  RRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDG

AT3G27970.1 Exonuclease family protein5.8e-1932.37Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELI--------------KGKILVGHALR
        VA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ A     VQ+++ E +              K +ILVGH L 
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELI--------------KGKILVGHALR

Query:  NDLKALLLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK
        +DL  L L +P   +RDT++Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Subjt:  NDLKALLLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTCAGCTCAAGAAGAGCCCTAAACCCAAATTGCTGAACCCCAATTGGGCGCTACTTCAACAAAAGCTGAAACCCCATGGGTCAAACCACTCAAGGTCCTCTAG
TGTTCCGAAATCCGAAGCTTCATCAAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATG
ACTTTAGTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTT
ATATACGATGAATTTGTACGCCCTATAGAGCGTGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGATTTGAAGAAAGCTAAGGATTTTCCAACTGTCCA
GAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCATTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCT
CCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGAGCTCTTCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGAT
GCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAA
ATCCAAGGATGGAGGAGGTGGTTTTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTCAGCTCAAGAAGAGCCCTAAACCCAAATTGCTGAACCCCAATTGGGCGCTACTTCAACAAAAGCTGAAACCCCATGGGTCAAACCACTCAAGGTCCTCTAG
TGTTCCGAAATCCGAAGCTTCATCAAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATG
ACTTTAGTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTT
ATATACGATGAATTTGTACGCCCTATAGAGCGTGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGATTTGAAGAAAGCTAAGGATTTTCCAACTGTCCA
GAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCATTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCT
CCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGAGCTCTTCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGAT
GCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAA
ATCCAAGGATGGAGGAGGTGGTTTTGAATGA
Protein sequenceShow/hide protein sequence
MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNV
IYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVED
ARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGGGFE