CuGenDBv2

Gene ID	HG10013841
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Genome location	Chr02:5261309..5262592
RNA-Seq Expression	HG10013841
Synteny	HG10013841
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0031083 - BLOC-1 complex (cellular component)
InterPro domains	IPR017246 - Snapin IPR028119 - Snapin/Pallidin/Snn1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_038897517.1 uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]

2.8e-62

93.01

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897518.1 uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]

5.7e-63

93.06

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG

XP_038897519.1 uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]

2.8e-62

93.01

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897521.1 uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]

2.8e-62

93.01

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897522.1 uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]

4.3e-63

92.41

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPGD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG+
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPGD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 7

8.8e-62

92.31

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MH PEKLD+DYSANEDSN+SAEL TSISP GDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAI+MGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 7

2.0e-50

81.82

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHSPEK+ +D  ANEDS++S EL TSIS NGDL+E N   N NL NSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLDR+TTELDQLLE APFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAISMGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FHK0 Biogenesis of lysosome-related organelles complex 1 subunit 7

7.8e-50

79.02

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHS EK+ +D SAN+DS +SAEL  SISPNGD++E N   N NLG+SNALANGLSSML+NI+RDFDSKA DTLKSQS+LS SLDRLT+ELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 7

7.8e-50

79.02

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHS EK+ +D SAN+DS +SAEL  SISPNGD++E N   N NLG+SNALANGLSSML+NI+RDFDSKA DTLKSQS+LS SLDRLT+ELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 7

1.8e-51

82.52

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP
        MHSPEK+ +D  ANEDS+ S EL TSIS NG+L+E N   N NL NSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLDR+TTELDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRIS+VRKRVLSLNSILR+IQRR+DNIDRAISMGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G79070.1 SNARE-associated protein-related

1.8e-27

54.76

Show/hide

Query:  ANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV
        ++ D   SA+  TS   +   ++G  C     G   A+A GLS+ML ++I+DFDSKA DTL SQ ELS SLDRL  ELDQLLE+AP PFI+QHASRIS+V
Subjt:  ANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV

Query:  RKRVLSLNSILRTIQRRVDNIDRAIS
        ++RV SLN +L+++QRR+DNID  +S
Subjt:  RKRVLSLNSILRTIQRRVDNIDRAIS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCACAGTCCGGAGAAATTGGATGAAGATTATTCTGCCAATGAGGACAGCAACCTCTCGGCTGAATTAGGGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAA
TGGTTGTGAAAATAAGAACTTGGGGAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATTATAAGGGATTTTGACTCCAAAGCTGGTGATACTCTTA
AAAGCCAGAGCGAGCTTTCATCTTCCCTTGATCGTCTTACTACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCT
AATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAACGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGGTGATTGA

mRNA sequence

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Protein sequence

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MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDRLTTELDQLLEDAPFPFIMQHASRIS
NVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPGD

HG10013841 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome