; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013847 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013847
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationChr02:5328195..5330927
RNA-Seq ExpressionHG10013847
SyntenyHG10013847
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8365217.1 hypothetical protein BUALT_Bualt18G0081400 [Buddleja alternifolia]7.6e-5278.01Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE
        + + SSL+LKPS FAV++SA  RG    +PSLART+  RVEASG KKIKTDKPYGIGGGM+LR+GVDASGRK  GKGVYQ+VDKYGANVDGYSPIYN  E
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE

Query:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSP+GDVY GG TGLAIWA+TL GLLAGGALLVYNTSALAQ
Subjt:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

KAG8386594.1 hypothetical protein BUALT_Bualt03G0164500 [Buddleja alternifolia]1.0e-5178.01Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE
        + V SS++LKPS FAV RSA  RG    +PSLART++ RV+ASG KKIKTDKP+GIGGGM+LR+G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN  E
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE

Query:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSP+GDVY GG TGLAIWA TL GLLAGGALLVYNTSALAQ
Subjt:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

NP_001295724.1 photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]2.2e-5179.86Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN
        MA SV+A S++LKPS F+VQ+S+  RG    +P L+R  +F+VEA G KKIKTDKPYGIGGGMNLRNG+DASGRK TGKGVYQYVDKYGANVDGYSPIYN
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN

Query:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        T+EWSPTGDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSALAQ
Subjt:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

XP_002529952.1 photosystem II 10 kDa polypeptide, chloroplastic [Ricinus communis]6.9e-5379.86Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN
        MA SV+A S++LKPS F VQ+S++ RG    +P+L+R  +FR+EASG KKIKTDKPYGIGGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIYN
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN

Query:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        T+EWSPTGDVYAGG TGLAIWA+TL GLLAGGALLVYNTSALAQ
Subjt:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

XP_038899014.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]1.1e-6191.1Show/hide
Query:  MAISVV-ASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI
        MAISVV ASSL+LKPSNFAVQRSA D  R V IPSLART SSF+VEASG KKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI
Subjt:  MAISVV-ASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI

Query:  YNTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        YNT+EWSPTGDVYA G TGLAIWAVTLLGLLAGGALLVYNTSALAQ
Subjt:  YNTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

TrEMBL top hitse value%identityAlignment
A0A1Q3CEP0 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-5179.17Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN
        MA SV+A SL+LKPS F V  S   RG    +PSLARTSSF+VEASG KKIKT+ PYG GGGMNLR+GVDASGRKP GKGVYQ+VDKYGANVDGYSPIY+
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN

Query:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        T++W+PTGDVYAGGVTGLAIWAVTL+GLLAGGALLVYNTSAL+Q
Subjt:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

A0A540KF82 Photosystem II 10 kDa polypeptide, chloroplastic1.4e-5176.55Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY
        M+ SV+A S++LKPS F V++SA  RG    +PSL+R+S SF+V+ASGVKKIKTD PYG GGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIY
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY

Query:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        N +EW+P+GDVYAGG+TGLAIWAVTL G+LAGGALLVYNTSAL+Q
Subjt:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

A0A6I9UCR6 Photosystem II 10 kDa polypeptide, chloroplastic1.8e-5177.3Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE
        S V SS++LKP+ F  ++SA  RG    +PSLART+ FRV ASG KKIKTDKPYG+GGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIYN +E
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE

Query:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSP+GDVY GG TGLAIWAVTL+G+LAGGALLVYNTSAL+Q
Subjt:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

B9SVD3 Photosystem II 10 kDa polypeptide, chloroplastic3.3e-5379.86Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN
        MA SV+A S++LKPS F VQ+S++ RG    +P+L+R  +FR+EASG KKIKTDKPYGIGGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIYN
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN

Query:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        T+EWSPTGDVYAGG TGLAIWA+TL GLLAGGALLVYNTSALAQ
Subjt:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

D6BRD6 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-5179.86Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN
        MA SV+A S++LKPS F+VQ+S+  RG    +P L+R  +F+VEA G KKIKTDKPYGIGGGMNLRNG+DASGRK TGKGVYQYVDKYGANVDGYSPIYN
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYN

Query:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        T+EWSPTGDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSALAQ
Subjt:  TNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic2.5e-5075.35Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTN
        S V SSL+LKP+ F +++++  +G    +PSLAR +SSF+V ASGVKK+KTDKPYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNT+
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTN

Query:  EWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        EWSP+GDVY GG TGLAIWAVTL+G+LAGGALLVYNTSALAQ
Subjt:  EWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

P10690 Photosystem II 10 kDa polypeptide, chloroplastic1.0e-5175.86Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY
        MA SV+ SSL+LKPS+F V   +  +G    +PSL+R+S SF V ASGVKKIK DKP GIGGGM LR+GVD+SGRKPTGKGVYQ+VDKYGANVDGYSPIY
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY

Query:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        N  EW+PTGDVYAGG TGL IWAVTL GLLAGGALLVYNTSALAQ
Subjt:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic1.7e-4973.1Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY
        MA SV+ SS+TLKP+ F V+++A  RG    +PSL R   SF++ ASGVKKIKTDKP+GI G M+LR+GVDASGRK  G GVY+YVDKYGANVDGYSPIY
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY

Query:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        N NEWS +GDVY GGVTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic7.4e-5075.35Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTN
        S V SSL+LKP+ F +++ +  +G    +PSL R +SSF+V ASGVKK+KTDKPYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNT+
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTN

Query:  EWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        EWSP+GDVY GG TGLAIWAVTLLG+LAGGALLVYNTSALAQ
Subjt:  EWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic1.7e-4971.63Show/hide
Query:  VVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE
        + ++ ++LKP+ F+V+++A  +G    +PSLAR +SSFRV+ASGVKK+KTDKPYGI G M+LR+GVDASGRK  GKGVYQ+VDKYGANVDGYSPIYNT++
Subjt:  VVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNE

Query:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSP+GDVY GG TGLAIWAVTL+G+LAGGALLV+NTSALAQ
Subjt:  WSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R1.2e-5073.1Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY
        MA SV+ SS+TLKP+ F V+++A  RG    +PSL R   SF++ ASGVKKIKTDKP+GI G M+LR+GVDASGRK  G GVY+YVDKYGANVDGYSPIY
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIY

Query:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        N NEWS +GDVY GGVTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  NTNEWSPTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATCTCCGTCGTCGCTTCTTCTCTCACCCTCAAACCGTCCAATTTCGCCGTCCAGAGATCTGCGACTGATCGAGGCCGCCGTGTTTTAATTCCTTCACTC
GCAAGGACTTCTTCGTTCAGAGTCGAGGCCAGCGGCGTCAAGAAAATCAAGACTGATAAACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGAT
GCGTCCGGGAGGAAGCCGACGGGCAAAGGGGTATACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGTCCTATCTACAACACTAATGAATGGTCT
CCAACCGGTGATGTATATGCTGGGGGTGTAACTGGGCTGGCTATTTGGGCCGTAACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTCTAGTCTACAACACAAGT
GCTCTGGCCCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATCTCCGTCGTCGCTTCTTCTCTCACCCTCAAACCGTCCAATTTCGCCGTCCAGAGATCTGCGACTGATCGAGGCCGCCGTGTTTTAATTCCTTCACTC
GCAAGGACTTCTTCGTTCAGAGTCGAGGCCAGCGGCGTCAAGAAAATCAAGACTGATAAACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGAT
GCGTCCGGGAGGAAGCCGACGGGCAAAGGGGTATACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGTCCTATCTACAACACTAATGAATGGTCT
CCAACCGGTGATGTATATGCTGGGGGTGTAACTGGGCTGGCTATTTGGGCCGTAACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTCTAGTCTACAACACAAGT
GCTCTGGCCCAGTAA
Protein sequenceShow/hide protein sequence
MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTNEWS
PTGDVYAGGVTGLAIWAVTLLGLLAGGALLVYNTSALAQ