; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10013899 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10013899
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D3
Genome locationChr02:5839102..5841553
RNA-Seq ExpressionHG10013899
SyntenyHG10013899
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR034099 - Small nuclear ribonucleoprotein Sm D3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064637.1 small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa]7.0e-5054.58Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

KAF3629783.1 Small nuclear ribonucleoprotein Sm D3 [Capsicum annuum]3.3e-5250.19Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMY----V
        MSRSLGIPVKLLHEA GH+V+VE+KSGELYRGSM+ECEDNWNCQLE+ITYTAK                  +  +Y    KG ++ + P  P ++     
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMY----V

Query:  PTPK-----------------------CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFI
        P PK                       C +  +R K  E     +S  +N     IP+     G              V  +++    DG+VSQLEHVFI
Subjt:  PTPK-----------------------CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFI

Query:  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RGSKVRFM+IPDMLKNAPMFKRL+ARIKGKG+SLGVGRGRA+AMRAKAQAAGRG+APGRG  P  RR
Subjt:  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

THU54077.1 hypothetical protein C4D60_Mb10t21220 [Musa balbisiana]7.5e-5255.37Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAK + L ++   ++ G         F          K H P +      
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTM-LLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR
                                                L+L+  T+ L + L+   +S  DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTM-LLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR

Query:  IKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR
        I+GKG++LGVGRGRAVAMRA+AQAAGRG AP GRG  P  RR
Subjt:  IKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR

XP_008452950.1 PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo]7.0e-5054.58Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

XP_038896140.1 small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida]1.8e-5055Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

TrEMBL top hitse value%identityAlignment
A0A0A0L5W4 Small nuclear ribonucleoprotein Sm D31.7e-4954.17Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKV FMVIPDMLKNAPMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

A0A1S3BVV0 Small nuclear ribonucleoprotein Sm D33.4e-5054.58Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

A0A4S8IYM3 Small nuclear ribonucleoprotein Sm D33.6e-5255.37Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAK + L ++   ++ G         F          K H P +      
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTM-LLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR
                                                L+L+  T+ L + L+   +S  DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTM-LLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR

Query:  IKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR
        I+GKG++LGVGRGRAVAMRA+AQAAGRG AP GRG  P  RR
Subjt:  IKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR

A0A5D3D8Q1 Small nuclear ribonucleoprotein Sm D33.4e-5054.58Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

A0A6J1DDX8 Small nuclear ribonucleoprotein Sm D31.4e-4853.75Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGKGASLGVGRGRAVAMRAKAQAAGRGSA GRGA PS RR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

SwissProt top hitse value%identityAlignment
P62318 Small nuclear ribonucleoprotein Sm D35.1e-1930.38Show/hide
Query:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSN
        S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T                      YR                            
Subjt:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSN

Query:  CLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK
                                                                  DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +    K K
Subjt:  CLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK

Query:  GASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
            G GRG+A  ++A+  A GRG   GRG     RR
Subjt:  GASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

P62320 Small nuclear ribonucleoprotein Sm D35.1e-1930.38Show/hide
Query:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSN
        S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T                      YR                            
Subjt:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSN

Query:  CLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK
                                                                  DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +    K K
Subjt:  CLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK

Query:  GASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
            G GRG+A  ++A+  A GRG   GRG     RR
Subjt:  GASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

P62323 Small nuclear ribonucleoprotein Sm D35.1e-1930.38Show/hide
Query:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSN
        S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T                      YR                            
Subjt:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSN

Query:  CLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK
                                                                  DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +    K K
Subjt:  CLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK

Query:  GASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
            G GRG+A  ++A+  A GRG   GRG     RR
Subjt:  GASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

Q9LM92 Small nuclear ribonucleoprotein SmD3b9.8e-3946.47Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPD+LK+APMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR
        KGK +SLGVGRGR  AMR K A   GRG+  GRGA P  RR
Subjt:  KGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR

Q9S7E6 Small nuclear ribonucleoprotein SmD3a2.9e-3845.42Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGS VRF+VIPDMLKNAPMFK  D R 
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGK ASLGVGRGR  AMRAK    GRG+  GRGA P  RR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

Arabidopsis top hitse value%identityAlignment
AT1G20580.1 Small nuclear ribonucleoprotein family protein7.0e-4046.47Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGSKVRFMVIPD+LK+APMFKRLDARI
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR
        KGK +SLGVGRGR  AMR K A   GRG+  GRGA P  RR
Subjt:  KGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR

AT1G20600.1 AP2/B3-like transcriptional factor family protein8.1e-04100Show/hide
Query:  TDGKVSQLEHVFIRGSKVR
        TDGKVSQLEHVFIRGSKVR
Subjt:  TDGKVSQLEHVFIRGSKVR

AT1G76300.1 snRNP core protein SMD32.0e-3945.42Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK
        MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPK

Query:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI
                                                                     DGKVSQLEHVFIRGS VRF+VIPDMLKNAPMFK  D R 
Subjt:  CSNCLMRLKIGENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI

Query:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        KGK ASLGVGRGR  AMRAK    GRG+  GRGA P  RR
Subjt:  KGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

AT5G27720.1 Small nuclear ribonucleoprotein family protein1.6e-0440.43Show/hide
Query:  IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK
        +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+K
Subjt:  IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGGGGAAGTATGATCGAGTG
TGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGAAAATGAAATTAACATTGTTCGAACGCCAGAAAATTTCCGGGAATAGGAAACACTCTCCAT
ATCGTTACTTTCAACATGTAAAAGGAACAATAATCGCATTTAAGCCCCACAGACCTGACATGTATGTTCCAACCCCAAAATGTAGCAATTGTCTAATGAGACTGAAAATC
GGAGAAAACATGAAAAGAGGGCATTCACTGGTCAGCAATGGTGACCGCAACTTCATACCCAGGTTCAATGGTGATGGAGGCTTGGCTTCGTTGGTTTTGTTGCTGTGTAC
CATGCTTCTGGTTGTTCTGAATCTCAAAAGTGCATCTGGGACAGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATAC
CAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAA
GCCCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCGCCATCTGGCCGAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGGGGAAGTATGATCGAGTG
TGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGAAAATGAAATTAACATTGTTCGAACGCCAGAAAATTTCCGGGAATAGGAAACACTCTCCAT
ATCGTTACTTTCAACATGTAAAAGGAACAATAATCGCATTTAAGCCCCACAGACCTGACATGTATGTTCCAACCCCAAAATGTAGCAATTGTCTAATGAGACTGAAAATC
GGAGAAAACATGAAAAGAGGGCATTCACTGGTCAGCAATGGTGACCGCAACTTCATACCCAGGTTCAATGGTGATGGAGGCTTGGCTTCGTTGGTTTTGTTGCTGTGTAC
CATGCTTCTGGTTGTTCTGAATCTCAAAAGTGCATCTGGGACAGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATAC
CAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAA
GCCCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCGCCATCTGGCCGAAGGTGA
Protein sequenceShow/hide protein sequence
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKMKLTLFERQKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
GENMKRGHSLVSNGDRNFIPRFNGDGGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK
AQAAGRGSAPGRGAAPSGRR