CuGenDBv2

Gene ID	HG10013964
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mitochondrial
Genome location	Chr02:6471263..6471784
RNA-Seq Expression	HG10013964
Synteny	HG10013964
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0004386 - helicase activity (molecular function)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0063266.1 Mitochondrial [Cucumis melo var. makuwa]

3.0e-55

88.89

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQC+A K+KESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATS +AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVRVLLIP
         WPVIIP+EEL QPLTSIKVR L +P
Subjt:  TWPVIIPDEELNQPLTSIKVRVLLIP

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.2e-57

91.27

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQC+A KAKESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATST +QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVRVLLIP
        TWPVIIPDEELNQP  SIKVR+LL+P
Subjt:  TWPVIIPDEELNQPLTSIKVRVLLIP

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

1.5e-54

92.56

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQC+A KAKESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATST AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVR
        TWPVIIPDEELNQP  SIK R
Subjt:  TWPVIIPDEELNQPLTSIKVR

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

5.2e-55

91.8

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQC+A KAKESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATST AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVRV
        TWPVIIPDEELNQP  SIK+R+
Subjt:  TWPVIIPDEELNQPLTSIKVRV

XP_038896893.1 uncharacterized protein LOC120085105 [Benincasa hispida]

8.9e-55

92.56

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQC+A KAKESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATST AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVR
        TWPVIIPDEEL QPL+ IK R
Subjt:  TWPVIIPDEELNQPLTSIKVR

TrEMBL top hits

e value

%identity

Alignment

A0A5D3E6Q7 Mitochondrial

1.5e-55

88.89

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQC+A K+KESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATS +AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVRVLLIP
         WPVIIP+EEL QPLTSIKVR L +P
Subjt:  TWPVIIPDEELNQPLTSIKVRVLLIP

A0A6J1CC86 uncharacterized protein LOC111010210

1.1e-53

90.08

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQC+A KAKESNPACQLIVKRRTDD PPQI+VTFVNGVEEVFDATST AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVR
        TWP++IP+EEL QP  SIK R
Subjt:  TWPVIIPDEELNQPLTSIKVR

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

1.6e-54

93.28

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQC+A KAKESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATST AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIK
        TWPVIIPDEELNQP  SIK
Subjt:  TWPVIIPDEELNQPLTSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

7.3e-55

92.56

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQC+A KAKESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATST AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVR
        TWPVIIPDEELNQP  SIK R
Subjt:  TWPVIIPDEELNQPLTSIKVR

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

2.5e-55

91.8

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQC+A KAKESNPACQLIVKRRTDD+PPQI+VTFVNGVEEVFDATST AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVRV
        TWPVIIPDEELNQP  SIK+R+
Subjt:  TWPVIIPDEELNQPLTSIKVRV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

2.7e-49

77.69

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLASC+EFLAQC+A KAKESNP CQ++VKRRTD+ PPQI+VTFVNGVEE FDA +T+AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPLTSIKVR
         WPVIIPDEEL Q    +K R
Subjt:  TWPVIIPDEELNQPLTSIKVR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGAAGTTCCTGTCTAAAGTGAAGATCGAATTCAATGCCCTCGATCCACGCTTAGCGTCTTGCATGGAATTCTTGGCGCAGTGTCATGCTCCAAAGGCCAAGGAATC
GAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGACGACTACCCGCCCCAGATCTCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGACGCTACCTCTACTA
CTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAACTTGGCCTGTTATCATTCCCGATGAGGAG
CTCAATCAACCCCTTACCAGTATCAAGGTTCGTGTTCTTCTTATCCCTTACTGTGAACGTTTCTTGGTCCTCTTCTGCCGGAGTTTTCATTTGGTACTGCCTGTGGCATT
TTGTCGAACAATATATGTGCATGAAGAGTTTTATGAACTTTCTGCTTTTAAAATAATTTTTTTCAATTGTTTTGTTTTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLKFLSKVKIEFNALDPRLASCMEFLAQCHAPKAKESNPACQLIVKRRTDDYPPQISVTFVNGVEEVFDATSTTAQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEE
LNQPLTSIKVRVLLIPYCERFLVLFCRSFHLVLPVAFCRTIYVHEEFYELSAFKIIFFNCFVL

HG10013964 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome