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HG10014127 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014127
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein DCL, chloroplastic
Genome locationChr02:7807442..7807729
RNA-Seq ExpressionHG10014127
SyntenyHG10014127
Gene Ontology termsGO:0009658 - chloroplast organization (biological process)
GO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064386.1 protein DCL [Cucumis melo var. makuwa]4.1e-3891.11Show/hide
Query:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MAMASIL   PF PFHSLNPNFFNSSP+ILCFPTHP+ SFHPSTRALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
Subjt:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

XP_004141259.1 protein DCL homolog, chloroplastic [Cucumis sativus]1.9e-3890Show/hide
Query:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MAMASILKPPPF PFHSLNPNFFNSSP+ILCFPTHP+ SFHPSTRALKTGPEG R+RSH+EYSSDLLRKPV P AKDLAGPSEDDDSSEE
Subjt:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

XP_008452556.1 PREDICTED: protein DCL, chloroplastic [Cucumis melo]4.1e-3891.11Show/hide
Query:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MAMASIL   PF PFHSLNPNFFNSSP+ILCFPTHP+ SFHPSTRALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
Subjt:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

XP_023524488.1 protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo]6.0e-3789.13Show/hide
Query:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MVMA+ASILKPPP  PFHSLNP+FF SSPVILCFPTH MTSFHPSTRALKTGPEGSRIRSHEE SSDLLRKPVVPPAKDLAG SED++SSEE
Subjt:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

XP_038897137.1 protein DCL homolog, chloroplastic [Benincasa hispida]4.1e-3891.3Show/hide
Query:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        M+MAMASILKPPPF P HSLNPNFFNSSPVILCFPT PMTSFH STRALKTGPEGSRIRSHEEYSSDLLRKPVVPPA+DLA  SEDDDSSEE
Subjt:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

TrEMBL top hitse value%identityAlignment
A0A0A0L2D0 Uncharacterized protein9.0e-3990Show/hide
Query:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MAMASILKPPPF PFHSLNPNFFNSSP+ILCFPTHP+ SFHPSTRALKTGPEG R+RSH+EYSSDLLRKPV P AKDLAGPSEDDDSSEE
Subjt:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

A0A1S3BVA4 protein DCL, chloroplastic2.0e-3891.11Show/hide
Query:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MAMASIL   PF PFHSLNPNFFNSSP+ILCFPTHP+ SFHPSTRALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
Subjt:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

A0A5A7VDC9 Protein DCL2.0e-3891.11Show/hide
Query:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MAMASIL   PF PFHSLNPNFFNSSP+ILCFPTHP+ SFHPSTRALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
Subjt:  MAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

A0A6J1FJS0 protein DCL homolog, chloroplastic-like1.1e-3688.04Show/hide
Query:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MVMA+ASILKPPP  PFHSLNP+FF SSPVILCFPTH MTSFHPSTRAL TGPEGSRIRSHEE SSDLLRKPVVPPAKDLAG SED++SSEE
Subjt:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

A0A6J1IW88 protein DCL homolog, chloroplastic-like1.4e-3688.04Show/hide
Query:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE
        MVMA+ASILKPPP  PFHSL P+FF SSPVILCFPTH MTSFHPSTRALKTGPEGSRIRSHEE SSDLLRKPVVPPAKDLAG SED++SSEE
Subjt:  MVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATGGTCATGGCCATGGCGTCCATTTTGAAGCCACCGCCATTTGCGCCTTTTCACTCCCTAAATCCAAACTTCTTCAACTCTTCACCAGTGATCTTATGTTTTCC
TACACACCCAATGACGTCGTTTCACCCATCTACTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGAATTCGAAGCCACGAAGAATATAGTTCTGATTTGCTGCGAAAAC
CGGTTGTTCCCCCGGCGAAGGACCTGGCTGGACCATCGGAGGATGACGATAGCAGTGAGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATGGTCATGGCCATGGCGTCCATTTTGAAGCCACCGCCATTTGCGCCTTTTCACTCCCTAAATCCAAACTTCTTCAACTCTTCACCAGTGATCTTATGTTTTCC
TACACACCCAATGACGTCGTTTCACCCATCTACTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGAATTCGAAGCCACGAAGAATATAGTTCTGATTTGCTGCGAAAAC
CGGTTGTTCCCCCGGCGAAGGACCTGGCTGGACCATCGGAGGATGACGATAGCAGTGAGGAGATGTGA
Protein sequenceShow/hide protein sequence
MGMVMAMASILKPPPFAPFHSLNPNFFNSSPVILCFPTHPMTSFHPSTRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDLAGPSEDDDSSEEM