CuGenDBv2

Gene ID	HG10014242
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	BRISC and BRCA1-A complex member 1
Genome location	Chr02:8826350..8827082
RNA-Seq Expression	HG10014242
Synteny	HG10014242
Gene Ontology terms	GO:0045739 - positive regulation of DNA repair (biological process) GO:0070531 - BRCA1-A complex (cellular component) GO:0070552 - BRISC complex (cellular component)
InterPro domains	IPR026126 - BRISC and BRCA1-A complex member 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004141308.1 BRISC and BRCA1-A complex member 1 [Cucumis sativus]

1.1e-40

93.55

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        MEAIEVERGGSGYSLK SRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIW+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

XP_008452703.1 PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis melo]

1.3e-41

94.62

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIW+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

XP_022941399.1 uncharacterized protein LOC111446703 [Cucurbita moschata]

2.2e-38

88.17

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        ME +E ERGGS YSLKPSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSA W+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

XP_023524345.1 uncharacterized protein LOC111788267 [Cucurbita pepo subsp. pepo]

1.0e-38

89.25

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        ME IE ERGGS YSLKPSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSA W+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

XP_038897935.1 BRISC and BRCA1-A complex member 1 [Benincasa hispida]

6.3e-41

92.47

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        MEAIEVERGGSGYSLKPSRLN+EDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTT+AKSAIW+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L024 BRISC and BRCA1-A complex member 1

5.2e-41

93.55

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        MEAIEVERGGSGYSLK SRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIW+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

A0A1S3BUH3 BRISC and BRCA1-A complex member 1

6.1e-42

94.62

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIW+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

A0A6J1CMH8 BRISC and BRCA1-A complex member 1

1.5e-35

82.8

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        MEAIE +RG S YSLKPSR++NEDILFCIDV+ ESS+EIKTTGSNGRPITRMDSIKQAILLFVHAKLS+NP+HRFAFTTIAKSAIW+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

A0A6J1FN80 BRISC and BRCA1-A complex member 1

1.1e-38

88.17

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        ME +E ERGGS YSLKPSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSA W+ + F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

A0A6J1J2J5 BRISC and BRCA1-A complex member 1

1.8e-38

88.17

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Query:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS
        ME IE ERGGS YSL+PSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSA W+   F S
Subjt:  MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G32960.1 unknown protein

3.4e-29

59.79

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Query:  GGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHSVNDQSSGLAELK
        G + Y+LKP R+ +EDIL CIDV+ ES VE+KTTG+NGRP+ RM+ +KQAI+LF+H KLS+NPDHRFAF T+AKSA W+ + F S  D  S +A L+
Subjt:  GGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHSVNDQSSGLAELK

AT4G32970.1 unknown protein

5.9e-21

51.09

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Query:  SLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHSVNDQSSGLAELK
        S++PS    EDIL C+DV+ ES+VE+KTTG+NG+P+ R++ +K AI  F+H KLS N DHRFAF T+++SA W+ + F   ND  S  A L+
Subjt:  SLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHSVNDQSSGLAELK

Sequences

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CDS sequence

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ATGGAAGCAATCGAAGTTGAGAGAGGAGGAAGCGGATACTCACTGAAACCATCGAGATTAAACAACGAAGACATTCTCTTCTGCATAGATGTGAACCCTGAATCTTCCGT
TGAGATCAAAACCACCGGCTCTAATGGACGACCCATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACC
GATTTGCCTTCACCACCATCGCCAAATCCGCCATCTGGATTATTGAGGGATTCCATTCCGTAAATGATCAGTCCTCTGGCTTGGCTGAGTTAAAGCCTAATGCCTTCTCA
GTCTGGGATCCTTAA

mRNA sequence

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Protein sequence

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MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWIIEGFHSVNDQSSGLAELKPNAFS
VWDP

HG10014242 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome